Gene
RNA
| Item | Value |
|---|---|
| gene id | G225485 |
| gene name | NA |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 3274728 ~ 3287337 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006376 | mRNA splice site selection | biological_process |
| GO:0000245 | spliceosomal complex assembly | biological_process |
| GO:1901265 | nucleoside phosphate binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU305753 | True | 487 | lncRNA | 0.49 | 3 | 3274728 | 3287337 |
| TU305756 | False | 355 | lncRNA | 0.53 | 2 | 3286642 | 3287153 |
| TU305757 | False | 329 | lncRNA | 0.53 | 2 | 3286642 | 3287153 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120553565 | NA | coding | upstream | 157088 | 3110841 ~ 3117640 (+) |
| trnat-ugu_32 | NA | coding | upstream | 341999 | 2932657 ~ 2932729 (+) |
| trnat-ugu_31 | NA | coding | upstream | 350533 | 2924123 ~ 2924195 (+) |
| trnat-ugu_30 | NA | coding | upstream | 352162 | 2922494 ~ 2922566 (+) |
| trnat-ugu_29 | NA | coding | upstream | 352826 | 2921830 ~ 2921902 (+) |
| cct2 | cct2 | coding | downstream | 41613 | 3328950 ~ 3347986 (+) |
| LOC120553119 | LOC104957567 | coding | downstream | 259402 | 3546739 ~ 3567593 (+) |
| cand1 | cand1 | coding | downstream | 449145 | 3736482 ~ 3800595 (+) |
| mdm1 | NA | coding | downstream | 554659 | 3841996 ~ 3873319 (+) |
| il22 | NA | coding | downstream | 594836 | 3882173 ~ 3888180 (+) |
| G225447 | NA | non-coding | upstream | 22434 | 3250042 ~ 3252294 (+) |
| G225448 | NA | non-coding | upstream | 25405 | 3246367 ~ 3249323 (+) |
| G225481 | NA | non-coding | upstream | 46695 | 3227676 ~ 3228033 (+) |
| G225475 | NA | non-coding | upstream | 79104 | 3175912 ~ 3195624 (+) |
| G225474 | NA | non-coding | upstream | 82419 | 3173017 ~ 3192309 (+) |
| G225489 | NA | non-coding | downstream | 19677 | 3307014 ~ 3308044 (+) |
| G225542 | NA | non-coding | downstream | 65194 | 3352531 ~ 3352810 (+) |
| G225550 | NA | non-coding | downstream | 66117 | 3353454 ~ 3362929 (+) |
| G225549 | NA | non-coding | downstream | 133146 | 3420483 ~ 3420957 (+) |
| G225561 | NA | non-coding | downstream | 191157 | 3478494 ~ 3546916 (+) |
| LOC120553724 | lgr5,LOC102312898,LOC102787110 | other | upstream | 28525 | 3176540 ~ 3246203 (+) |
| G225445 | NA | other | upstream | 143426 | 3129944 ~ 3131302 (+) |
| G225394 | NA | other | upstream | 424132 | 2850153 ~ 2850596 (+) |
| G225344 | NA | other | upstream | 511142 | 2740384 ~ 2763586 (+) |
| G224811 | LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 | other | upstream | 611594 | 2642536 ~ 2663134 (+) |
| nots | LOC104935800 | other | downstream | 65511 | 3352848 ~ 3377335 (+) |
| shank3b | LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 | other | downstream | 133026 | 3420363 ~ 3506467 (+) |
| trnat-ugu_33 | NA | other | downstream | 222743 | 3510080 ~ 3510152 (+) |
| trnat-ugu_34 | NA | other | downstream | 230213 | 3517550 ~ 3517622 (+) |
| trnat-ugu_35 | NA | other | downstream | 231124 | 3518461 ~ 3518533 (+) |
