nots (LOC104935800)


Basic Information

Item Value
gene id nots
gene name LOC104935800
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3352848 ~ 3377335 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU305876
atactcacacacacacagtagtagGTGATCCAATCAGAGCAGCAGTGAACTCTGAGGATAAAACCTCATGGTctgacagacagccagacagacagacgggtgcagagacagacatgttgtggccggtgttggtgctgctgttGGTTTGGACATGGACGAGCTCGGCGCTGGTCAGGCTCAGTACTACGGTGAAATCAGTTTGGGGACTCCAGTGCAGAACTTCTCTGTGATTTTTGACACCGGCTCATCTGACCTCTGGGTGCCGTCAACCTACTGCGTCAGCCAAGCCTGTGGT
>XM_039790999.1
AACCTCATGGTctgacagacagccagacagacagacgggtgcagagacagacatgttgtggccggtgttggtgctgctgttGGTTTGGACATGGACGAGCTCGGCGCTGGTCAGGGTTCCTCTGAGGCGCGTGCCTTCGATTCGTTCCCAGCTGCGAGCCAACGGCCTGCTGCAGGAGTTCCTGAAGGAGTCCCGCCCAGACATGTTTAACCGGCGCTACGCTCAGTGCTACCCGCCCGGCACGCCGTCGCTGCGGCTGAGGCGCTCCAGCGAGAAGCTCTACAACTTCATGGACGCTCAGTACTACGGTGAAATCAGTTTGGGGACTCCAGTGCAGAACTTCTCTGTGATTTTTGACACCGGCTCATCTGACCTCTGGGTGCCGTCAACCTACTGCGTCAGCCAAGCCTGTGGTAAGAcacaacGCAGCTCTCGCGTTGATTCCACGTCTTTCCATCATGACGGTCGGGTATTTGGGATCCACTACGGCTCAGGACACCTGATGGGAGTCATGGTCAGAGAAACGCTGAAGGTCGGGAATATGTCCATCCTGAACCAGGAGTTCGGGGAGTCAGTCTATGAGCCCGGTTCCGCATTTGTAATGGCGAAGTTCGACGGTATTCTGGGGATGGCTTACCCGTCCCTGGCAGAGATCGTTGGAAACCCCGTTTTCGACAACATGTTGGCGCAGAGGACGGTGGATGAGCCGgttttttccttcttcctcaGCAGGAAAACAAGTAGAAGCAACCCAGAAGGCGAACTGTTGATAGGCGGAATTGACAAGTTGTTGTACAGTGGACCAATCAACTGGCTCCCAGTGACTGCTAAGGGATACTGGCAGATTAAGATGGACAGTGTCGCGGTGCAAGGTGTGAGTTCCTTCTGTCCTCGTGGTTGTCAGGCGATTGTCGATACGGGAACCTCCCTCATCGCTGGACCGACTACCGACATCCTCAAActccagcagctgattggagcCACACCCTCAAACATAGACGAGTACCTTATCGACTGTGCCAGGTTGTCTAGTTTACCTCATGTGACATTCGTACTCGGAGGAATACAGTACACACTGACTGCTGAGCAATACGTTAGGAAGGAGATGCTTGGCAACAGGGTGTTTTGTTTCAGTGGCTTCCAGGCCGTGGATATTTTTTCCGCCGATGGCCCCCTGTGGATTCTGGGAGATGTATTTCTTACAGAGTTTTACAGCATCTTTGACAGAGGACAGGACCGTGTTGGCTTTGCCTCTGCTAGGCACCCAACCAAACCCTAACCCATCGGTTATCATTGGCTGACAACTATATCATCAATAAATACTGGTGAATTAAAATGA

Function

NR:

description
PREDICTED: cathepsin E-like

GO: NA

KEGG:

id description
K01382 CTSE; cathepsin E

RNA

RNA id representative length rna type GC content exon number start site end site
TU305876 False 295 lncRNA 0.53 2 3352848 3365910
XM_039790999.1 True 1339 mRNA 0.53 9 3352909 3377335

Neighbor

gene id symbol gene type direction distance location
cct2 cct2 coding upstream 4862 3328950 ~ 3347986 (+)
LOC120553725 NA coding upstream 50098 3260679 ~ 3302750 (+)
LOC120553565 NA coding upstream 235208 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 420119 2932657 ~ 2932729 (+)
trnat-ugu_31 NA coding upstream 428653 2924123 ~ 2924195 (+)
LOC120553119 LOC104957567 coding downstream 169404 3546739 ~ 3567593 (+)
cand1 cand1 coding downstream 359147 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 464661 3841996 ~ 3873319 (+)
il22 NA coding downstream 504838 3882173 ~ 3888180 (+)
LOC120553047 NA coding downstream 621399 3998734 ~ 4019042 (+)
G225542 NA non-coding upstream 38 3352531 ~ 3352810 (+)
G225489 NA non-coding upstream 44804 3307014 ~ 3308044 (+)
G225485 NA non-coding upstream 65511 3274728 ~ 3287337 (+)
G225447 NA non-coding upstream 100554 3250042 ~ 3252294 (+)
G225448 NA non-coding upstream 103525 3246367 ~ 3249323 (+)
G225549 NA non-coding downstream 43148 3420483 ~ 3420957 (+)
G225561 NA non-coding downstream 101159 3478494 ~ 3546916 (+)
G225570 NA non-coding downstream 192187 3569522 ~ 3627258 (+)
G225571 lsm8,LOC106596712,LOC106589648 non-coding downstream 193433 3570768 ~ 3574316 (+)
G225575 NA non-coding downstream 197715 3575050 ~ 3576021 (+)
LOC120553724 lgr5,LOC102312898,LOC102787110 other upstream 106645 3176540 ~ 3246203 (+)
G225445 NA other upstream 221546 3129944 ~ 3131302 (+)
G225394 NA other upstream 502252 2850153 ~ 2850596 (+)
G225344 NA other upstream 589262 2740384 ~ 2763586 (+)
G224811 LOC106958509,LOC107690788,LOC107671222,LOC107574171,LOC107579420 other upstream 689714 2642536 ~ 2663134 (+)
shank3b LOC103368171,LOC102784289,LOC102309694,LOC101473766,LOC102207252,LOC103382509,LOC107374533,LOC103154279 other downstream 43028 3420363 ~ 3506467 (+)
trnat-ugu_33 NA other downstream 132745 3510080 ~ 3510152 (+)
trnat-ugu_34 NA other downstream 140215 3517550 ~ 3517622 (+)
trnat-ugu_35 NA other downstream 141126 3518461 ~ 3518533 (+)
trnat-ugu_36 NA other downstream 144097 3521432 ~ 3521505 (+)

Expression


Co-expression Network