G225566


Basic Information

Item Value
gene id G225566
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3577619 ~ 3616179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU305910
ggtggagagCAGTGGAGCCCGACAGGACAAACACCAGGAACGTCATGCTACCAAAGTATTAAATTTGTACAAAAATACTTTACAACATCCCTGTTCCTTTAAAGAAAAATACAGTTTGGTTGGTTGGTGAAGCTACATGGAAACTAATCTGACCCACTACTTCAAATGGCAGtgcaatgcatgtgtgtgtctgtgtgtgtgtgtattgtctgtgtgttgtgtgtgtgtgtgtgggcgtgtatgtgtgtctgtgagtgtgtatgtgtgtgtgtgtgtgttgtctgtgtgttgtgtatgtgtgtatgtgtgtgtgtgtgttgtgtgcgtgtgtgtgtgtgggcgtgtgtgtgtgtgggcggatGTCTTGCTGAGGTGAGTCACTAGAGTGCAAATCCCTGCAAtgtaatatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagagagagagagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305910 True 484 lncRNA 0.46 3 3577619 3616179

Neighbor

gene id symbol gene type direction distance location
LOC120553119 LOC104957567 coding upstream 10026 3546739 ~ 3567593 (+)
cct2 cct2 coding upstream 229633 3328950 ~ 3347986 (+)
LOC120553725 NA coding upstream 274869 3260679 ~ 3302750 (+)
LOC120553565 NA coding upstream 459979 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 644890 2932657 ~ 2932729 (+)
cand1 cand1 coding downstream 120303 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 225817 3841996 ~ 3873319 (+)
il22 NA coding downstream 265994 3882173 ~ 3888180 (+)
LOC120553047 NA coding downstream 382555 3998734 ~ 4019042 (+)
LOC120553050 NA coding downstream 477481 4093660 ~ 4107645 (+)
G225575 NA non-coding upstream 1598 3575050 ~ 3576021 (+)
G225571 lsm8,LOC106596712,LOC106589648 non-coding upstream 3303 3570768 ~ 3574316 (+)
G225561 NA non-coding upstream 30703 3478494 ~ 3546916 (+)
G225549 NA non-coding upstream 156662 3420483 ~ 3420957 (+)
G225550 NA non-coding upstream 214690 3353454 ~ 3362929 (+)
G225593 NA non-coding downstream 96123 3712302 ~ 3748393 (+)
G225592 NA non-coding downstream 131678 3747857 ~ 3801170 (+)
G225591 NA non-coding downstream 135774 3751953 ~ 3785419 (+)
G225597 NA non-coding downstream 163078 3779257 ~ 3781402 (+)
G225598 NA non-coding downstream 172233 3788412 ~ 3792834 (+)
trnat-ugu_40 NA other upstream 42947 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 43958 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 45539 3532008 ~ 3532080 (+)
trnat-ugu_37 NA other upstream 49058 3528489 ~ 3528561 (+)
trnat-ugu_36 NA other upstream 56114 3521432 ~ 3521505 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other downstream 198302 3814481 ~ 3841174 (+)
LOC120553793 NA other downstream 319495 3935674 ~ 3938954 (+)
G225894 NA other downstream 1041265 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1665079 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 3044341 6660520 ~ 6686639 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110499739 grip1 misc NC_048585.1 CM023239.2 3585864 ~ 4306764 (-)