G225571 (lsm8,LOC106596712,LOC106589648)


Basic Information

Item Value
gene id G225571
gene name lsm8,LOC106596712,LOC106589648
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3570768 ~ 3574316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU305916
tgaaactttatttaaacaatCTCAATCGGACAAAAACTGACTCGTCGAACCATAAAAAAGTTAATCTAACAACAACTGTAGCaattctttatttataaaaaaatacaaacagaaaaatgTCAGAGCaggagtaacacacacacacactaacagctGAGTCATGTTGTCATCTGTTGCCATGGcgacagagagaaaggaggaggggtggtggggggggaggggggttagAGGCTAGTGGACGATGGAGTTGAGTGGCTCGGCTCTGATGTTTCCTAAATCCAGAGTGGAGTCTGTGTCCTCGTCGATCTCCCCGATCACCGCcACGTTGTCTCCTCTGACGATGTAGAGTCCCAGCACCACCTGCTCCACGCCCTGGCTGGAGCTGAACACCCGCTCGTGGCTCTCGTCCAGGATCAGGTTGATGGTCTGGTCGAAGCCCTTCAGGGttccctgaaacacacacacacacacacacacacacacacattaaaacttCTGGGGTCAACAgcaggacacagagagagaacagttaGCTTTCTGCAGAAATACGACTACATTAAATGTCATTCTTCTGGCGCTCAGCGCGGTCGGGGGGGGCGCTG

Function

symbol description
lsm8 Predicted to enable RNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).

NR:

description
PREDICTED: LSM8 homolog, U6 small nuclear RNA associated

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305916 True 602 lncRNA 0.50 2 3570768 3574316

Neighbor

gene id symbol gene type direction distance location
LOC120553119 LOC104957567 coding upstream 3175 3546739 ~ 3567593 (+)
cct2 cct2 coding upstream 222782 3328950 ~ 3347986 (+)
LOC120553725 NA coding upstream 268018 3260679 ~ 3302750 (+)
LOC120553565 NA coding upstream 453128 3110841 ~ 3117640 (+)
trnat-ugu_32 NA coding upstream 638039 2932657 ~ 2932729 (+)
cand1 cand1 coding downstream 162166 3736482 ~ 3800595 (+)
mdm1 NA coding downstream 267680 3841996 ~ 3873319 (+)
il22 NA coding downstream 307857 3882173 ~ 3888180 (+)
LOC120553047 NA coding downstream 424418 3998734 ~ 4019042 (+)
LOC120553050 NA coding downstream 519344 4093660 ~ 4107645 (+)
G225561 NA non-coding upstream 23852 3478494 ~ 3546916 (+)
G225549 NA non-coding upstream 149811 3420483 ~ 3420957 (+)
G225550 NA non-coding upstream 207839 3353454 ~ 3362929 (+)
G225542 NA non-coding upstream 217958 3352531 ~ 3352810 (+)
G225489 NA non-coding upstream 262724 3307014 ~ 3308044 (+)
G225575 NA non-coding downstream 734 3575050 ~ 3576021 (+)
G225566 NA non-coding downstream 3303 3577619 ~ 3616179 (+)
G225580 NA non-coding downstream 32513 3606829 ~ 3713336 (+)
G225581 NA non-coding downstream 34660 3608976 ~ 3707786 (+)
G225593 NA non-coding downstream 137986 3712302 ~ 3748393 (+)
trnat-ugu_40 NA other upstream 36096 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 37107 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 38688 3532008 ~ 3532080 (+)
trnat-ugu_37 NA other upstream 42207 3528489 ~ 3528561 (+)
trnat-ugu_36 NA other upstream 49263 3521432 ~ 3521505 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other downstream 240165 3814481 ~ 3841174 (+)
LOC120553793 NA other downstream 361358 3935674 ~ 3938954 (+)
G225894 NA other downstream 1083128 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1706942 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 3086204 6660520 ~ 6686639 (+)

Expression


Co-expression Network