LOC120553793


Basic Information

Item Value
gene id LOC120553793
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3935674 ~ 3938954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306138
acacTTAAAAATGCTGGGTTATTTTGGTTACTCATATGCTGGGTTAAGCCTGGAATGTATAAGTTTACCCATAATTGGGTTACAAAATGGTTAAACATATTATAACCCATTGCATTGGGTTGATGACGTTGAATGAAATTCAGGCTTCAGTTTTTCTGCCGCCATATTTTGGATGACAttgttttaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcatgagtCATGACATGGTATGGGAAGAGTAAAAAACGTGACATAAAAGACGTATAAAAACGTTTGTTTCGTATCATTACATCAGATCATGTGTATAGGTTTAGCTTAGTTTAAAAACAGTCTAACGATTTTAGAATAATAACCTGTTGATTTAGCTTCGTTTTATTCAAGTAACGTTATTAAATATAAATCCAACACGATTTGCGTTGCAAATATATACCAGCAAAGAACTACGGCGGgcggagacagaaacacattgaaGAGATCGCTCTATCTGGAACCCCGCCCGCTGGATcttcacacagagaaaaacaagcGCACCTCTTCAACTGTCGTAACCCCCAGACACCCCAAATCGTTGTCTCTCGCTCTCGTGAGTTGGCATCGGACCAGCAGCTAATTTTCTCAAAAACCACATTTGGTTCGTCGGGCAGGGAGGCGAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATTTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTggtgatccccccccccccggcacCTACAAAATCCGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCGTAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGAGCACAG
>XR_005638207.1
accATTGGCAATGTCCGTACGTTACTAACGGTCGgtggattagctaacgttagtaacGTTTTATTCATAAACCGCTCCTTAAACCGAGCTAAATCAACGTTAGCTACGTTTTAGTGTTCCAACATTTGTCATGGCattatagctagctagctagcaagccaATGTAGCATACGATGACTCAGATAAGCTAGCCAGCTGCTAGCTATCTTATGAAGTGTGACATTAAGCTTAATTAACGTTATTTCAAAGGAGTCGTTAATGGAGACATTTCAAGGCTGTGTCGTTGTTATCTTTTATGTCTGTTTGCACATTCAAATTTACGTTGTCTatcggttttattttttattaagatATATCTGAGTCATTGTATGCTAGCTAAATTGGCTTGCTAGCTAGCTCGGTTTAAGGAGCGGTTTATGAATAAAACgttactaacgttagctaatccacCGACCGTTAGTAACGTACAGACATTGCCAATggtaaattagtttgggatatTTTAATTTAGAAGTCTAAAAATGGGcggcaacattttttttttcacggcAACTGTAACCGTCCTCAGCCTACGTTATGAATGACCATGACTGTTAAAAGACGAACACTGCCATCTTGCTTGCTGAATTGTGAACATGCAGAAAAAGGAGGGAAATAGAGGGAAATTTGTATTCCGCTATCATGTAGCCTATTTTGAATGCTCATGcttgcatgtgttttgtgttatgtATAAAGTACTTTATGTAGTTccttttaaatacaaaatgcaAATTGTAATGCTGACGAAGACAGGCGAACACATCGCCGGTTCCCGCCAATAGGTTCATTTTAGTTAGTGAACTACCTGGCAAAGAAGTCTTGCATCAATCTAATCTGTTGGGACCAACGTGCTAAATTTCACCTGCATGAGCTATTGTCACAGAGTACTTTGCCTCCATGCAGCTGAATTCCACTAATATAGAAATTGGCTGAttctaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcctgccAAAATAACTATTCTTGATTATTCATTATAAGTTATTAGCTGTAAAATGTTGTTGTTGGCGTGATGAGAATGACCACTTGCTTGcttgacatttctgaatgctTATTGAACAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATTTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTggtgatccccccccccccggcacCTACAAAATCCGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCGTAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGA
>XR_005638208.1
acTTAAAAATGCTGGGTTATTTTGGTTACTCATATGCTGGGTTAAGCCTGGAATGTATAAGTTTACCCATAATTGGGTTACAAAATGGTTAAACATATTATAACCCATTGCATTGGGTTGATGACGTTGAATGAAATTCAGGCTTCAGTTTTTCTGCCGCCATATTTTGGATGACAttgttttaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcatgagtCATGACATGGTATGGGAAGAGTAAAAAACGTGACATAAAAGACGTATAAAAACGTTTGTTTCGTATCATTACATCAGATCATGTGTATAGGTTTAGCTTAGTTTAAAAACAGTCTAACGATTTTAGAATAATAACCTGTTGATTTAGCTTCGTTTTATTCAAGTAACGTTATTAAATATAAATCCAACACGATTTGCGTTGCAAATATATACCAGCAAAGAACTACGGCGGgcggagacagaaacacattgaaGAGATCGCTCTATCTGGAACCCCGCCCGCTGGATcttcacacagagaaaaacaagcGCACCTCTTCAACTGTCGTAACCCCCAGACACCCCAAATCGTTGTCTCTCGCTCTCGTGAGTTGGCATCGGACCAGCAGCTAATTTTCTCAAAAACCACATTTGGTTCGTCGGGCAGGGAGGCGAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATTTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTggtgatccccccccccccggcacCTACAAAATCCGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCGTAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306138 False 1241 TUCP 0.44 4 3935674 3938954
XR_005638207.1 True 1646 lncRNA 0.41 3 3936572 3938948
XR_005638208.1 False 1233 lncRNA 0.44 4 3935676 3938948

Neighbor

gene id symbol gene type direction distance location
il22 NA coding upstream 47494 3882173 ~ 3888180 (+)
mdm1 NA coding upstream 62355 3841996 ~ 3873319 (+)
cand1 cand1 coding upstream 135079 3736482 ~ 3800595 (+)
LOC120553119 LOC104957567 coding upstream 368081 3546739 ~ 3567593 (+)
cct2 cct2 coding upstream 587688 3328950 ~ 3347986 (+)
LOC120553047 NA coding downstream 59780 3998734 ~ 4019042 (+)
LOC120553050 NA coding downstream 154706 4093660 ~ 4107645 (+)
LOC120553052 NA coding downstream 216341 4155295 ~ 4175824 (+)
trnal-caa_13 NA coding downstream 247607 4186561 ~ 4186671 (+)
trnal-caa_14 NA coding downstream 249215 4188169 ~ 4188279 (+)
G225708 NA non-coding upstream 8709 3886624 ~ 3926965 (+)
G225607 NA non-coding upstream 103144 3831438 ~ 3832530 (+)
G225602 NA non-coding upstream 123261 3812130 ~ 3812413 (+)
G225592 NA non-coding upstream 134504 3747857 ~ 3801170 (+)
G225721 NA non-coding downstream 58011 3996965 ~ 4051123 (+)
G225725 NA non-coding downstream 102451 4041405 ~ 4041726 (+)
G225785 NA non-coding downstream 199574 4138528 ~ 4140277 (+)
G225790 NA non-coding downstream 225475 4164429 ~ 4165021 (+)
G225804 NA non-coding downstream 273124 4212078 ~ 4212312 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 94500 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 401002 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 402013 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 403594 3532008 ~ 3532080 (+)
trnat-ugu_37 NA other upstream 407113 3528489 ~ 3528561 (+)
G225894 NA other downstream 718490 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 1342304 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 2721566 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 3379563 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 3384116 7323070 ~ 7332259 (+)

Expression


Co-expression Network