G225842


Basic Information

Item Value
gene id G225842
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4473611 ~ 4475127 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306315
TCATGCATTTGTGATATTTTACATCTTTTTAGTCTTCTGAAGCTACAACTGTCACCATCTTTGATGTTGTTCTTTTCTGTTGCAAAGTTGCCTGAAAAGGCATTATTTACCGGTTTATAACACTttattgtttactttttttcatagGAGGAAAAAAGGTTGTCGCCAATAGTTTTTGTGGAAAAATGTCatggtttgttttttactcCGTACCTTTGTAGTTCCCATCTCCAGCGCCTGGCTGTGGTGTGTGAACTCGgtttcgtctctctctctcacggtCTCCACCACCAGCTTGGTTATCGCAGCGACATCCAGACCATCTCTACCGGCATCAGTGGCGAGCTGCAGGCAGCGGGGGCGGATCTCCGGCTGGTTGACGGTCTCCAAGAAAGCGGCGTACTCAACGGTGGCGACCTCGGCGGGTAACTGGCTAACGTAGCTCGCCACGAGGTCGGTCTGCTGATCCCGTACCAGAAGGGAGACGTACGCCTTtagcacatccacacacacctcctcctgAGGAGAGCGAGAAAAAGGTGAGCAGACATCACCCTGAACTGTTCCTAAATCTGAGTGAACACACAGATTCTGATTCtcaagagagaaaaaacacaacTTGGAAACGGTGTCAACATTTTTGACgatggtgctagatgaaaagttttTCACCAAAGGTAATTCAAATTCATCCTGATGGGAACATGAATGTCCGTACAAAAACTTCCCGGCAACAATCCAATAGTTAAAGTAAAGATATTCCAGTCTggaacaaagtggtggaccgaccgcCCCCTTTGAAAACGAGATGGTACATCTTTATCCTGATGTAATAACTGGGACCTATTCCTCTACTTTACCTTCAATGCCAAACCCAGAGAGCGGAAAAACAGCAGCAGGTGAGTCATGAAACGCAGCAGGTGGGAAGGGAGGGGCTTAGAGGTTGTCAGCCATTCAGAAAACTCCTCAAACAGAcctgagagagaaacagagagagaaaaaggttaCGGTTTATGGATAGAAGCAGTCTTTTTGGGGTTATAAGTACATTTTTAAGGCGGAGTGAAaactttattaataataatatattattt
>TU306316
TCATGCATTTGTGATATTTTACATCTTTTTAGTCTTCTGAAGCTACAACTGTCACCATCTTTGATGTTGTTCTTTTCTGTTGCAAAGTTGCCTGAAAAGGCATTATTTACCGGTTTATAACACTttattgtttactttttttcatagGAGGAAAAAAGGTTGTCGCCAATAGTTTTTGTGGAAAAATGTCatggtttgttttttactcCGTACCTTTGTAGTTCCCATCTCCAGCGCCTGGCTGTGGTGTGTGAACTCGgtttcgtctctctctctcacggtCTCCACCACCAGCTTGGTTATCGCAGCGACATCCAGACCATCTCTACCGGCATCAGTGGCGAGCTGCAGGCAGCGGGGGCGGATCTCCGGCTGGTTGACGGTCTCCAAGAAAGCGGCGTACTCAACGGTGGCGACCTCGGCGGGTAACTGGCTAACGTAGCTCGCCACGAGGTCGGTCTGCTGATCCCGTACCAGAAGGGAGACGTACGCCTTtagcacatccacacacacctcctcctgAGGAGAGCGAGAAAAAGATCTCAAATTAGATTCCTCATCAGGGGTCAGAGGTGTCTTACCGTCCAGGTCTCCCAGGATGACAAACTTCTGGATTACATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306315 True 1094 lncRNA 0.45 2 4473611 4475015
TU306316 False 622 lncRNA 0.49 3 4473611 4475127

Neighbor

gene id symbol gene type direction distance location
LOC120553538 LOC100693972,LOC102796305,LOC102207118,LOC102289868,LOC101481412 coding upstream 25574 4200672 ~ 4448037 (+)
trnal-caa_19 NA coding upstream 276796 4196705 ~ 4196815 (+)
trnal-caa_18 NA coding upstream 279699 4193802 ~ 4193912 (+)
trnal-caa_17 NA coding upstream 282825 4190676 ~ 4190786 (+)
trnal-caa_16 NA coding upstream 283272 4190229 ~ 4190339 (+)
slc35e3 slc35e3 coding downstream 8334 4483461 ~ 4492887 (+)
upf2 upf2 coding downstream 20763 4495890 ~ 4522614 (+)
LOC120553579 rab3ip coding downstream 68046 4543173 ~ 4563272 (+)
kics2 clg23h12orf66,LOC103364500 coding downstream 115583 4590710 ~ 4594142 (+)
LOC120553359 v1ar1,LOC100695840,LOC101485029 coding downstream 213800 4688927 ~ 4696183 (+)
G225802 NA non-coding upstream 20179 4450060 ~ 4453432 (+)
G225807 NA non-coding upstream 164223 4309107 ~ 4309388 (+)
G225805 NA non-coding upstream 202375 4270793 ~ 4271236 (+)
G225804 NA non-coding upstream 261299 4212078 ~ 4212312 (+)
G225790 NA non-coding upstream 308590 4164429 ~ 4165021 (+)
G225847 NA non-coding downstream 14553 4489680 ~ 4490070 (+)
G225891 NA non-coding downstream 177840 4652967 ~ 4653360 (+)
G225892 NA non-coding downstream 181368 4656495 ~ 4656819 (+)
G225895 NA non-coding downstream 183057 4658184 ~ 4658631 (+)
G225901 NA non-coding downstream 233736 4708863 ~ 4709269 (+)
LOC120553793 NA other upstream 534657 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 632437 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 938939 3534600 ~ 3534672 (+)
trnat-ugu_39 NA other upstream 939950 3533589 ~ 3533661 (+)
trnat-ugu_38 NA other upstream 941531 3532008 ~ 3532080 (+)
G225894 NA other downstream 182317 4657444 ~ 4657969 (+)
abcc9 abcc9,LOC107387088 other downstream 806131 5281258 ~ 5373637 (+)
prkcq prkcq,LOC102789446 other downstream 2185393 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 2843390 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 2847943 7323070 ~ 7332259 (+)

Expression


Co-expression Network