LOC120553649


Basic Information

Item Value
gene id LOC120553649
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4529987 ~ 4539797 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306354
ACCGAGCGCGCAACGCATctggacttttctttttttttaaagacaatttCTTTTACAACAAAGTTTACGGAGATACATGTTGATGCTGTCTCTCTGAAGGAAGAAACCACTGTCCCGTCTGTTTTTAGGATGACCTGATCTGTGGAGTTGTTGGaCTCTCGTTGAAAAGAATATTTGATGATTCCTCAGAGCGAGAACACGGCACCCTCCATGAGATGTCCCGATGACTTCTGAGCCTCGCACCATGAACGTCCGTCTGCAGGCCCAACCTCAGCCTCACTACGGGGTCAACGGGGGTGCTGGCAGAAGCTCCAGGCCATCTAGAGATGATGCATTGCAGTTCCTGAGCAAGGAGGAGAAGGAGTGCATCCAGTTCTTCGAGAACACCATTGACTCGTTGGAGGACAGTCTCGAGGAAAACGACCGGAGACCCGGGCAAGTCAAGACCCCTGCAAGCAGCGGCCCTGTTGTGTTTTCCCTCTTGGCCAGACCTCTCAGTCCCAAAGACCAGGATATTATATACCTGGTCAGCCCAGAACCTGACTTGGGGCAAAACAAAGGGCCGATCTTCAATCACACCAACCCAGATTTTCAGAGTATGATGCAGAACCCTGAAAGTCACTTCGAGACAAGGCCAGGGCGAGATCAGGTGGACAGCTTGCCTTCAGAGTACAACCCTCCCCTGCCGAGCGGCAGCTATGGGTCGACAGACAGCCACTACTCCTACCACCCTCCAGGCTGTATCCCCACCCCGGTTCTGATTGCCCAGCAGATAGCAGAGAACCAGGCAGGTGGAACCTCCAACTTCCATCCCTCCAAATTAATCCGCCGTAGCAGCCAGGAGTCCGACAAGCCACTTAGCTGTAGTGGCGATTTAAAACATGGTCCTGCTACCTCTGCTAAGCCCCGCTTTCCTGCTAACATCAGCGTGATCCATGGCAACAAGGAGCACCAGAACCAGCCGCTGGCTAATATGAACCTCAATGACAGACGGGCGCAGATGCTGGCAAACCTAACAGGAACGTCAAACC
>XM_039792287.1
CATTACGCACACGGAGCTCACCGAGCGCGCAACGCATctggacttttctttttttttaaagacaatttCTTTTACAACAAAGTTTACGGAGATACATGTTGATGCTGTCTCTCTGAAGGAAGAAACCACTGTCCCGTCTGTTTTTAGGATGACCTGATCTGTGGAGTTGTTGGaCTCTCGTTGAAAAGAATATTTGATGATTCCTCAGAGCGAGAACACGGCACCCTCCATGAGATGTCCCGATGACTTCTGAGCCTCGCACCATGAACGTCCGTCTGCAGGCCCAACCTCAGCCTCACTACGGGGTCAACGGGGGTGCTGGCAGAAGCTCCAGGCCATCTAGAGATGATGCATTGCAGTTCCTGAGCAAGGAGGAGAAGGAGTGCATCCAGTTCTTCGAGAACACCATTGACTCGTTGGAGGACAGTCTCGAGGAAAACGACCGGAGACCCGGGCAAGTCAAGACCCCTGCAAGCAGCGGCCCTGTTGTGTTTTCCCTCTTGGCCAGACCTCTCAGTCCCAAAGACCAGGATATTATATACCTGGTCAGCCCAGAACCTGACTTGGGGCAAAACAAAGGGCCGATCTTCAATCACACCAACCCAGATTTTCAGAGTATGATGCAGAACCCTGAAAGTCACTTCGAGACAAGGCCAGGGCGAGATCAGGTGGACAGCTTGCCTTCAGAGTACAACCCTCCCCTGCCGAGCGGCAGCTATGGGTCGACAGACAGCCACTACTCCTACCACCCTCCAGGCTGTATCCCCACCCCGGTTCTGATTGCCCAGCAGATAGCAGAGAACCAGGCAGGTGGAACCTCCAACTTCCATCCCTCCAAATTAATCCGCCGTAGCAGCCAGGAGTCCGACAAGCCACTTAGCTGTAGTGGCGATTTAAAACATGGTCCTGCTACCTCTGCTAAGCCCCGCTTTCCTGCTAACATCAGCGTGATCCATGGCAACAAGGAGCACCAGAACCAGCCGCTGGCTAATATGAACCTCAATGACAGACGGGCGCAGATGCTGGCAAACCTAACAGGAACGTCAAACCCTCTGCTGCAGGAGGATCCTCAGCCGGCCGTGAAACAGGAGGCTCGAACACAGGAGGCTCGAAATACTCCCACTCGCAGCATTTCCTTCAAGGACCCCTCACCGGATAAATCCAGGATGGAGGCCCTGTCTAAGCTGGGCCTGAGCAGGAACCAAGCCACGTCCGGGGGTATGTCGCCCGTCGCCGTCCCTGACAGCACCTCTCCGGATCCTCCTGCAGGCGCAGAAACCAGTGTCCAACCTTTGGAGGCCAATGTTCGTCCAACAACAGAAACCAACAGCAAATTGCCAAAAGCCAATGTTATGACAGCAACTCAGAGCCAGATTCATGTCAACAGCAAACAAGAGATTCTGCGGACAGAGTCCCTCAGGAGGTATGAAGAAAGAAACCACCAACCGAGCCCCTCGCCTCCAGCAGTCACACAGAGCAGCTACCATCCACCTCCTGTGAACAGAAAGGCATCCTTACCCCCTCCGCCTGAGGTCACCTCGCTGGAATCAAACAGCTACGGAGGGAAATCTATTATGGTTAACCCTTCTGTTTCTCACAGAAACGAACCGGTAACTTTGTCAACCAACCACGAACCAAAAATCCTCCCACCTGCGCAGGCTAAACCCAGCGAGTTCAACAACTACGGAGGAAAGACCAAAGTCATGACCCCTGCTCCTGCAGCCGTGACCAGGAGCGACCTTCCCGACATCCTCAGCTCCCATATCAACAAGAGTCAAACCTTGCCCGCCAAATCAGAGCCACTGCCCACCGAGCTTAACAGTTACGGAGGAAAGAGCCGAACCTTCAACCCCTCCACCGGGTTAAATCGCCCTTCAGACAGCCCAGGAAAAAGTTTTAAAGCTCCAGCTCCAACCCCGGCTCCAAGACCTCCTCGACAGTCATACCACGGCGCTGTTTCTACCCAGAAACCAGCACTGCGAGCCTCATCACCTGAACCGCGGCGGAGATCGGGCTCCATGTTTCGTCCCCAAGGCATCACTGTGCAGTTTTCTGGACGGGGGGCGACGGACGAATCGCGCAGGGATGCGCTGAGGAAACTGGGGCTGCTGAAAGACTCTTGATAAACtctgaaaaaaagaattctTCAGTCTTCACCTGTCGCCGTCGAGACTGAATCTCTGGCGTGTACCTGCGGGTGGAGGTGAAATGCTGGAGTGCGAGGTGTGGTTGGAGAGAGACCTACTTTTACAGAGGAATGGAGCCAGATCCTTTTGAGAGACCTGCACAGCCAGTTCTCACTTCCTGGCcataaaaaaactgacaaacaaGTGTGACACGGTGCAGCTTCTGCAAACTCGACACTGTGTAAATGACAAAAGTCTTGACAAACGTCTTTACGTTGCCTCTGTTCCAAGACATTGTATACCTGTGCACAAGACAAGGAGAAGCATCCTCTTCTTGTGGGAATCAAATGACATTTGGTCTCCCGTCTCACCTTTGTTTGCCACATAAGAGGCTGATTGTGAATAGAATTTTTTAAACAGGGTCCTATTTCTTAAACACCTGGAAAAAGGCTGgagatattctatatttttgttatcGTCAACATACCCCATGTAAAAAACCAATGTGGCACTCAGCCCCCACTCGATTGGTTCCTAGTAAAGACgttcatct
>XM_039792288.1
CATTACGCACACGGAGCTCACCGAGCGCGCAACGCATctggacttttctttttttttaaagacaatttCTTTTACAACAAAGTTTACGGAGATACATGTTGATGCTGTCTCTCTGAAGGAAGAAACCACTGTCCCGTCTGTTTTTAGGATGACCTGATCTGTGGAGTTGTTGGAGCGAGAACACGGCACCCTCCATGAGATGTCCCGATGACTTCTGAGCCTCGCACCATGAACGTCCGTCTGCAGGCCCAACCTCAGCCTCACTACGGGGTCAACGGGGGTGCTGGCAGAAGCTCCAGGCCATCTAGAGATGATGCATTGCAGTTCCTGAGCAAGGAGGAGAAGGAGTGCATCCAGTTCTTCGAGAACACCATTGACTCGTTGGAGGACAGTCTCGAGGAAAACGACCGGAGACCCGGGCAAGTCAAGACCCCTGCAAGCAGCGGCCCTGTTGTGTTTTCCCTCTTGGCCAGACCTCTCAGTCCCAAAGACCAGGATATTATATACCTGGTCAGCCCAGAACCTGACTTGGGGCAAAACAAAGGGCCGATCTTCAATCACACCAACCCAGATTTTCAGAGTATGATGCAGAACCCTGAAAGTCACTTCGAGACAAGGCCAGGGCGAGATCAGGTGGACAGCTTGCCTTCAGAGTACAACCCTCCCCTGCCGAGCGGCAGCTATGGGTCGACAGACAGCCACTACTCCTACCACCCTCCAGGCTGTATCCCCACCCCGGTTCTGATTGCCCAGCAGATAGCAGAGAACCAGGCAGGTGGAACCTCCAACTTCCATCCCTCCAAATTAATCCGCCGTAGCAGCCAGGAGTCCGACAAGCCACTTAGCTGTAGTGGCGATTTAAAACATGGTCCTGCTACCTCTGCTAAGCCCCGCTTTCCTGCTAACATCAGCGTGATCCATGGCAACAAGGAGCACCAGAACCAGCCGCTGGCTAATATGAACCTCAATGACAGACGGGCGCAGATGCTGGCAAACCTAACAGGAACGTCAAACCCTCTGCTGCAGGAGGATCCTCAGCCGGCCGTGAAACAGGAGGCTCGAACACAGGAGGCTCGAAATACTCCCACTCGCAGCATTTCCTTCAAGGACCCCTCACCGGATAAATCCAGGATGGAGGCCCTGTCTAAGCTGGGCCTGAGCAGGAACCAAGCCACGTCCGGGGGTATGTCGCCCGTCGCCGTCCCTGACAGCACCTCTCCGGATCCTCCTGCAGGCGCAGAAACCAGTGTCCAACCTTTGGAGGCCAATGTTCGTCCAACAACAGAAACCAACAGCAAATTGCCAAAAGCCAATGTTATGACAGCAACTCAGAGCCAGATTCATGTCAACAGCAAACAAGAGATTCTGCGGACAGAGTCCCTCAGGAGGTATGAAGAAAGAAACCACCAACCGAGCCCCTCGCCTCCAGCAGTCACACAGAGCAGCTACCATCCACCTCCTGTGAACAGAAAGGCATCCTTACCCCCTCCGCCTGAGGTCACCTCGCTGGAATCAAACAGCTACGGAGGGAAATCTATTATGGTTAACCCTTCTGTTTCTCACAGAAACGAACCGGTAACTTTGTCAACCAACCACGAACCAAAAATCCTCCCACCTGCGCAGGCTAAACCCAGCGAGTTCAACAACTACGGAGGAAAGACCAAAGTCATGACCCCTGCTCCTGCAGCCGTGACCAGGAGCGACCTTCCCGACATCCTCAGCTCCCATATCAACAAGAGTCAAACCTTGCCCGCCAAATCAGAGCCACTGCCCACCGAGCTTAACAGTTACGGAGGAAAGAGCCGAACCTTCAACCCCTCCACCGGGTTAAATCGCCCTTCAGACAGCCCAGGAAAAAGTTTTAAAGCTCCAGCTCCAACCCCGGCTCCAAGACCTCCTCGACAGTCATACCACGGCGCTGTTTCTACCCAGAAACCAGCACTGCGAGCCTCATCACCTGAACCGCGGCGGAGATCGGGCTCCATGTTTCGTCCCCAAGGCATCACTGTGCAGTTTTCTGGACGGGGGGCGACGGACGAATCGCGCAGGGATGCGCTGAGGAAACTGGGGCTGCTGAAAGACTCTTGATAAACtctgaaaaaaagaattctTCAGTCTTCACCTGTCGCCGTCGAGACTGAATCTCTGGCGTGTACCTGCGGGTGGAGGTGAAATGCTGGAGTGCGAGGTGTGGTTGGAGAGAGACCTACTTTTACAGAGGAATGGAGCCAGATCCTTTTGAGAGACCTGCACAGCCAGTTCTCACTTCCTGGCcataaaaaaactgacaaacaaGTGTGACACGGTGCAGCTTCTGCAAACTCGACACTGTGTAAATGACAAAAGTCTTGACAAACGTCTTTACGTTGCCTCTGTTCCAAGACATTGTATACCTGTGCACAAGACAAGGAGAAGCATCCTCTTCTTGTGGGAATCAAATGACATTTGGTCTCCCGTCTCACCTTTGTTTGCCACATAAGAGGCTGATTGTGAATAGAATTTTTTAAACAGGGTCCTATTTCTTAAACACCTGGAAAAAGGCTGgagatattctatatttttgttatcGTCAACATACCCCATGTAAAAAACCAATGTGGCACTCAGCCCCCACTCGATTGGTTCCTAGTAAAGACgttcatct

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306354 False 1031 TUCP 0.53 4 4531616 4539778
XM_039792287.1 True 2679 mRNA 0.52 4 4529987 4539797
XM_039792288.1 False 2644 mRNA 0.52 4 4529987 4539797

Neighbor

gene id symbol gene type direction distance location
nup107 nup107,LOC102776523 coding downstream 47014 4469313 ~ 4482973 (-)
mdm2 mdm2,LOC104943639 coding downstream 61159 4456612 ~ 4468828 (-)
LOC120553051 NA coding downstream 379861 4140688 ~ 4150126 (-)
LOC120553727 NA coding downstream 404921 4115699 ~ 4125066 (-)
dyrk2 dyrk2,LOC104934917,LOC102780451 coding downstream 435496 4055436 ~ 4094491 (-)
tmem19 tmem19 coding upstream 35434 4575231 ~ 4586119 (-)
srgap1b srgap1,LOC101485500 coding upstream 56343 4596140 ~ 4708963 (-)
cwf19l1 cwf19l1,LOC102790608 coding upstream 171718 4711515 ~ 4734606 (-)
LOC120553207 trhde,LOC102788275 coding upstream 287056 4826853 ~ 5092468 (-)
LOC120553208 LOC102290724 coding upstream 504705 5044502 ~ 5050002 (-)
G225860 upf2,LOC102775865 non-coding downstream 16080 4511290 ~ 4513907 (-)
G225818 NA non-coding downstream 161946 4314314 ~ 4368041 (-)
G225815 NA non-coding downstream 258773 4270783 ~ 4271214 (-)
G225813 NA non-coding downstream 306714 4222970 ~ 4223273 (-)
G225811 NA non-coding downstream 328702 4200832 ~ 4201285 (-)
G225875 NA non-coding upstream 20973 4560770 ~ 4563303 (-)
G225909 NA non-coding upstream 118420 4658217 ~ 4658434 (-)
G225915 NA non-coding upstream 130330 4670127 ~ 4670454 (-)
G225945 NA non-coding upstream 215373 4755170 ~ 4756667 (-)
G225947 NA non-coding upstream 244461 4784258 ~ 4784458 (-)
G225751 NA other downstream 478796 4047316 ~ 4051191 (-)
G225652 NA other downstream 718697 3675809 ~ 3811290 (-)
G225672 cand1,LOC106591200,LOC107725503,LOC107571724,LOC107694273,LOC107655592 other downstream 725736 3800138 ~ 3804251 (-)
grip1 grip1,LOC104944456 other downstream 802874 3582126 ~ 3727113 (-)
G225541 NA other downstream 1181995 3342555 ~ 3347992 (-)
cpm cpm,LOC106925010 other upstream 217124 4756921 ~ 4782759 (-)
LOC120553807 LOC104934913 other upstream 703093 5242890 ~ 5263052 (-)
G226200 gns other upstream 2190510 6730307 ~ 6730782 (-)
tmem243b tmem243 other upstream 2534096 7073893 ~ 7086322 (-)
meig1 meig1 other upstream 2547147 7086944 ~ 7089168 (-)

Expression


Co-expression Network