LOC120553187


Basic Information

Item Value
gene id LOC120553187
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5374284 ~ 5412002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306525
TTGGCCAGTTGTTCCTGTGCTCTGCATGCATGAATGCATTGTGCAATCTCTCACTgtaaagacttcacaatgtcTTTGTCCTTCTTGGAGTTTCCTACCAGGAGGTCGATCTGTGTGTCTTTTTCCAATTTTGGCAAACATTTCCTTGGGACGAGATCAGCAGACGTCTTTGATGCAGGAGCAAAGCTGCCACGATCAGAAGGAACGTCATGAGCGCGTGCGGCCAGTCGGCAACCAACTTTGGTGTAAAGAGGGCGGAAACATACCAGTAACCAATCCAACGTTTGCTTTTTCACAAAGACGAAAAGCTTGATTTGAACTTCCCAAAgatttgattcaattcaattcagtttatatatgaaaggggacagtgcaaaagaaaaagaaagacaacacaagcaaAGCTGAACTtagcacaaaacaagacacaGCACAGAAGCAAAAAGATTAGATAATTAACTTtgttacaatgtttttttactttattacatTTAGAAAAAGCACAACCCAAACTGGCTCTTCATCAGGTACAGAGTTAGCAAAGTGACTGACAAAAGTCTTGATTTGAAATCCTCCATTTTCAGGATAAATCAGTCTAGAGATAAACTTGTCAAAGTCGGTTAAATTGGTGCATTTATACGACTTTGCAAGCAACGACAGCAGCAACGCACCGTGTCCATTTAACCAaacttttaatgtttaattgggGTTTCGAAATTATGATAGAACCCACCCTATAATCAAAACTGGGctttttccgaagtttttgttccttttctatgtttttgctgcatttttcctgcctttttcaaggttttttgaattttttttcaccttgtttttaaaaagaatgTCGCTTTTTTAGGCGTTTGTCACCTTTTCACGTTTTTTTTCGAGTTTTGTTTTCAACaaatgttttcaatgtttttgtctctttttttctttttaaatgcagcCCCAGGACCTCCCTAGATtattggagatctcaacccccccccaaaaaaaaaaaaattgaaaccAAAGTTAAGCCCCTGTCCCTAATAAACAcctagagtaaaaaaaaaatacctttaaTGTTAGTAAATCTGAGTTGAAAAGCAATTTAAATTTGTAAAAGTTGGATGTTTATTTGTGGTATACTTCCACCTTTCCTCTATCAGTTGTATTTCTCTAcctacactagtacaaacacTGTAGGGTGTCGCGGCTCAGGCTGAAGCCGGTGAACCCGCTGTCTGTCTGCGGTCATGCTTTGCTGAACATATTATCCTCGGGGACAATAGACGCCCAACCTGAGCTCCCATCGACTGCAGAGATGTGTAATGGTTTATTGTGGACTGAAAGGGATTTGTGAAATACTGAAGAGTTGCAGTTGAAAATGTCTGAACGATCCAAAGAGTTCTCAAACGTAAAGCTGCATTAAAGAATATTGCAAAGCCTGACAATGAATCAAAAGGCTACATATAGATTCAAATGTATCCACAGAGAATTATTATTAACTCTTTCAAAATCCCTGTCGCTAcgggaaacaacaaaaacaacttccGAGATAGCAacctacatgctgaaaatggcaggtTTTGACTAAGATTTAGATTGTGCCATAAAACAGGCCTTCTTGGTTCTTTCGGTAACGATTGTAAAGATAAACAAATCCACCTATATAATAGGGGCAGGAAAAAATATCAAATTGTATGTAtcgtgttttttgtttgtgtgtaaa
>XR_005638126.1
tacatgtgtacagacgaggctagcagcagcagtgctgcatcagacacgtttctggtgtggcAAGACATGACAAAATCCatgcagccgccacgcaacagaaacgccacgctcccgccacgcagccagtgtgaggCCGGCCTAAGGGAAAGTGTGATCACCAGAGTCAGGCCAGGAGGCAGCAGCTGGAGGGAGATGAAGTGCTGTAGGAGTCATCCAGCTGTAGCAGTACCTGGCGCGGGCAGCTCCAGCTTTGCCTTCCTGAGCTCCGTCATGGACGCCTGGAGCTGCTCAATCACAAAGTCGTCCTCGAAGAAGAAATCTTTGGACAAAGTCACCTGCAGAAACTCCACCAGCTCCTCCATGGACAGCTTCATCAGGTGCTCTGTAAATCACACACAACACTCGTAAGACTTTTTTAGTCTTTGAAAGGTGGACATCCGTAGCACTGAATAGAGTAAACGGCCTTACTCTTGTGCAGTTTGAGGATTGTGTAGGACATGGTGGGCAGCACTCGTTCTCCCTCCAAGATGTAGATGTCCCAGATTCTGAGGGTCAGGGTAAAGGGAGTCttgacacaaacaaaacaaaagGTGTTGTTTCAGTTTGGGCATCATCTTCTTGAGGATGCGGTCGTGGTGATCCTGGAACCTTATCAGCTTCGGGAAGCCGGGGATAAAAAACCCTAAAAGgCTTTGACGCGAGCATCGGGAAGGTGGTAAGTTATGAGTCTGCCACGACCCGCCGGATCTGTGGGAAACCAATCTTAGACAACAACGCAGTCAACCTGTTCTCCTCCGTCATCATCGCACTCATCCTGCCAGGGCTGGCATGGGGGATGTGGCCTCGATAGACTGACAACTGTCAATGCAGCACAGCCGGACGACTAATATTAGACGGACTGCTGATTATTTGAGTAATATGTTGGTTGTTGTTGATTACAGAAGCATCACACTAAAAGTTAATACAACACGCACTCTGCGTGCATTCTTGAGAGGCTCTGATCATGATATCTCTCTTTGGAAGAAAAAAGAACAGTAATAAATACTAACCGATAAAAACTTAACAGTAACTGACGGACTGTGGATATCTACGCAGGTTTTAGGAGAACATTTATGGCCCGCATGCAGATATGGAATAGTAATTAAAtgggttgtgtttttgttctgtattttaaATTTGAAGCTGTTTTTTCCCCGCTTAATGTGATGTTTCAGTATTTAAGACTGATTTCTGGTATTGTTACAACCATAATTTATGCAGTATGTTTCCAAGTGAGTCTTCACAGTATGAATTTACATGTCactaattaaaaatatatttcctGTTGTATTGGCTGTAtacttttaaataaaaggtgttttttgtttgtgtgtaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306525 True 1723 lncRNA 0.38 2 5374284 5412002
XR_005638126.1 False 1376 lncRNA 0.46 4 5405930 5412002

Neighbor

gene id symbol gene type direction distance location
LOC120553019 NA coding upstream 135940 5235150 ~ 5238344 (+)
LOC120553055 NA coding upstream 570042 4793287 ~ 4804242 (+)
dmtf1 NA coding upstream 625042 4734262 ~ 4749242 (+)
LOC120553359 v1ar1,LOC100695840,LOC101485029 coding upstream 678101 4688927 ~ 4696183 (+)
kics2 clg23h12orf66,LOC103364500 coding upstream 780142 4590710 ~ 4594142 (+)
kin kin,LOC103372864 coding downstream 1101843 6513845 ~ 6519452 (+)
itih5 itih5 coding downstream 1123173 6535175 ~ 6553086 (+)
sfmbt2 sfmbt2 coding downstream 1167110 6579112 ~ 6636681 (+)
gnsa gns,LOC102788091 coding downstream 1307106 6719108 ~ 6734409 (+)
LOC120553270 NA coding downstream 1564330 6976332 ~ 6995588 (+)
G226014 NA non-coding upstream 45915 5327996 ~ 5328369 (+)
G225983 NA non-coding upstream 170125 5186966 ~ 5204159 (+)
G225986 NA non-coding upstream 187801 5185667 ~ 5186483 (+)
G225985 NA non-coding upstream 188718 5183913 ~ 5185566 (+)
G225973 trhde,LOC103372213,LOC102788275 non-coding upstream 210511 5079479 ~ 5163773 (+)
G226027 NA non-coding downstream 132844 5544846 ~ 5552199 (+)
G226028 NA non-coding downstream 140251 5552253 ~ 5552473 (+)
G226029 NA non-coding downstream 140519 5552521 ~ 5553325 (+)
G226042 NA non-coding downstream 338126 5750128 ~ 5776433 (+)
G226085 NA non-coding downstream 507092 5919094 ~ 5919414 (+)
abcc9 abcc9,LOC107387088 other upstream 647 5281258 ~ 5373637 (+)
G225894 NA other upstream 716315 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 1435330 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 1533110 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 1839612 3534600 ~ 3534672 (+)
prkcq prkcq,LOC102789446 other downstream 1248518 6660520 ~ 6686639 (+)
snrpf snrpf,LOC106576293 other downstream 1906515 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 1911068 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 1951323 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 1958440 7370442 ~ 7400399 (+)

Expression


Co-expression Network