LOC120553807 (LOC104934913)


Basic Information

Item Value
gene id LOC120553807
gene name LOC104934913
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5242890 ~ 5263052 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306577
TGGAGGATGCCACCGCGAGCAAAAAGAAGATGTTTTAAACGGCTCTCAGTCGGCTAACTCCAGCTCAGAGGGGCGCTGCGTGATGGTGGGCCCCGACTTTTACCCTCCGAACCAACAGCTCACAGAGAAACTATGGGTTCACTCCGAGCCCTGTGGTCCCATCCTGAAGAGCTACCTGAGCTTCCCCATCAAACTCAGGATAGGAATCATTTCAGCCTTCGCCACCATTACGATGGCGGCCATTGCTCTGTGTCTGACGTTGGGTCTGGAGGAATATTGGAAGACGCCTCCGGTGGAAACTACAGTCGATGACTTCAACAGAGTGAAATATAAACCCAAACCCTCCCTcacctgacctctgacctctgacccctcaCCCACGACCGAGGCCTCACTTCAAACTGCTGGTGATGATCGCAAGAGTTCAACGAAATTGCATCATGCACTCTTTCGGGATCTGAATTTTCTTTATACATAATTTATAGTTGACAGAATGACAGTTTTAAGAAGAGATGAAACCGTTCCTATCTCTGTTTATGTTATTATATTTggctgggtgaaaaaaaaaactttaaatctAAATAAAGAGGGAATGGCAGCTGGTTTGGATGAAATGTTTGGCTCTcaacttcctttttttaaaagttttataaataaagtttattttatCAGTGACATGTACGTTTGTGTAGTCTTTAGTTGTTTAAAAGCCGCATATCATGTTATTTCTGATCTACGTCACTACCTAGAGCActatttgcactaactgtatattgactttTCACTACATTCAACATCTACATAGACGGTCTATTCCGGTTAACTGTATTATTGCTGACCTATATCACTAACCAGACCAcaatttgcactaactgtatatcgACTC
>XM_039792522.1
cagcTGATTTTCCAAACTTGGTCATGTTCTTCGCACTGCAGCCAAACACTCCTGAGCTTTAaacatccatctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacggctctgGTCTTTGCTCTGTTTCTATTTTAGCTCGGCTCTCTCAGACAGCAGTCATGGCTCGCTGCAGGAGTTACTTACGAGGACTCGCCATCTGTGTCACTGTGCTGCTACTGGTTTCTGGTGTGGTGATGATAGGCGTCGGATTTTCCTCCGTCAAAGACAATATATTGGTTGCCCAGtTGTCCAGTAGCGACGGCTTACTGGTCCTACAGGTGTTCGGTCCAATAACTGTGGTTTTGTCAGTTCTGGGAATCTGTGCCGCGTCTTTGGACCTTAAACCTCTACTGCTGgtgTTTTCCGCTCTGATATTCGTGGAGTTTGTGGCTATGATGGTTGTTGCCGCACCGCTGGTTCATGTTCAAGCTCAGATGGGCGGTGCAGTGGACGAGGTGTTTCTCAACGTAACCCCCCTCCACAGAGCAGAGAGTTACATCCAGACTGAACTCAACAAACTCCAGGCCTCCGACTCTTGTTGTGGGTTGAGGAGTTTTGAGGACTGGGAGAATCAACTTCCTGTCACCTGTTTCTGCACACCGCCCGCCTCCAACCTGCAGCCGAGCTCTCAGTCGGCTAACTCCAGCTCAGAGGGGCGCTGCGTGATGGTGGGCCCCGACTTTTACCCTCCGAACCAACAGCTCACAGAGAAACTATGGGTTCACTCCGAGCCCTGTGGTCCCATCCTGAAGAGCTACCTGAGCTTCCCCATCAAACTCAGGATAGGAATCATTTCAGCCTTCGCCACCATTACGATGGCGGCCATTGCTCTGTGTCTGACGTTGGGTCTGGAGGAATATTGGAAGACGCCTCCGGTGGAAACTACAGTCGATGACTTCAACAGAGTGAAATATAAACCCAAACCCTCCCTcacctgacctctgacctctgacccctcaCCCACGACCGAGGCCTCACTTCAAACTGCTGGTGATGATCGCAAGAGTTCAACGAAATTGCATCATGCACTCTTTCGGGATCTGAATTTTCTTTATACATAATTTATAGTTGACAGAATGACAGTTTTAAGAAGAGATGAAACCGTTCCTATCTCTGTTTATGTTATTATATTTggctgggtgaaaaaaaaaactttaaatctAAATAAAGAGGGAATGGCAGCTGGTTTGGATGAAATGTTTGGCTCTcaacttcctttttttaaaagttttataaataaagtttattttatCAGTGA
>XM_039792523.1
ccagcTGATTTTCCAAACTTGGTCATGTTCTTCGCACTGCAGCCAAACACTCCTGAGCTTTAaacatccatctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacggctctgGTCTTTGCTCTGTTTCTATTTTAGCTCGGCTCTCTCAGACAGCAGTCATGGCTCGCTGCAGGAGTTACTTACGAGGACTCGCCATCTGTGTCACTGTGCTGCTACTGGTTTCTGGTGTGGTGATGATAGGCGTCGGATTTTCCTCCGTCAAAGACAATATATTGGTTGCCCAGtTGTCCAGTAGCGACGGCTTACTGGTCCTACAGGTGTTCGGTCCAATAACTGTGGTTTTGTCAGTTCTGGGAATCTGTGCCGCGTCTTTGGACCTTAAACCTCTACTGCTGgtgATGGGCGGTGCAGTGGACGAGGTGTTTCTCAACGTAACCCCCCTCCACAGAGCAGAGAGTTACATCCAGACTGAACTCAACAAACTCCAGGCCTCCGACTCTTGTTGTGGGTTGAGGAGTTTTGAGGACTGGGAGAATCAACTTCCTGTCACCTGTTTCTGCACACCGCCCGCCTCCAACCTGCAGCCGAGCTCTCAGTCGGCTAACTCCAGCTCAGAGGGGCGCTGCGTGATGGTGGGCCCCGACTTTTACCCTCCGAACCAACAGCTCACAGAGAAACTATGGGTTCACTCCGAGCCCTGTGGTCCCATCCTGAAGAGCTACCTGAGCTTCCCCATCAAACTCAGGATAGGAATCATTTCAGCCTTCGCCACCATTACGATGGCGGCCATTGCTCTGTGTCTGACGTTGGGTCTGGAGGAATATTGGAAGACGCCTCCGGTGGAAACTACAGTCGATGACTTCAACAGAGTGAAATATAAACCCAAACCCTCCCTcacctgacctctgacctctgacccctcaCCCACGACCGAGGCCTCACTTCAAACTGCTGGTGATGATCGCAAGAGTTCAACGAAATTGCATCATGCACTCTTTCGGGATCTGAATTTTCTTTATACATAATTTATAGTTGACAGAATGACAGTTTTAAGAAGAGATGAAACCGTTCCTATCTCTGTTTATGTTATTATATTTggctgggtgaaaaaaaaaactttaaatctAAATAAAGAGGGAATGGCAGCTGGTTTGGATGAAATGTTTGGCTCTcaacttcctttttttaaaagttttataaataaagtttattttatCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306577 False 886 TUCP 0.43 4 5242890 5250716
XM_039792522.1 True 1352 mRNA 0.48 9 5243101 5263051
XM_039792523.1 False 1278 mRNA 0.48 8 5243101 5263052

Neighbor

gene id symbol gene type direction distance location
LOC120553314 NA coding downstream 38800 5187025 ~ 5204090 (-)
LOC120553207 trhde,LOC102788275 coding downstream 150422 4826853 ~ 5092468 (-)
LOC120553208 LOC102290724 coding downstream 192888 5044502 ~ 5050002 (-)
cwf19l1 cwf19l1,LOC102790608 coding downstream 508284 4711515 ~ 4734606 (-)
srgap1b srgap1,LOC101485500 coding downstream 533927 4596140 ~ 4708963 (-)
usp6nl usp6nl coding upstream 139003 5402055 ~ 5528508 (-)
celf2 celf2,LOC106927059,LOC103370671,LOC107092344,LOC101484207,LOC100706659,LOC106576215,LOC106609337 coding upstream 289442 5552494 ~ 5790292 (-)
gata3 gata3,LOC102792415 coding upstream 1154180 6417232 ~ 6432726 (-)
atp5f1c atp5c1 coding upstream 1243526 6506578 ~ 6513168 (-)
itih2 itih2 coding upstream 1256305 6519357 ~ 6533661 (-)
G225947 NA non-coding downstream 458432 4784258 ~ 4784458 (-)
G225945 NA non-coding downstream 486223 4755170 ~ 4756667 (-)
G225915 NA non-coding downstream 572436 4670127 ~ 4670454 (-)
G225909 NA non-coding downstream 584456 4658217 ~ 4658434 (-)
G225875 NA non-coding downstream 679587 4560770 ~ 4563303 (-)
G226047 NA non-coding upstream 4875 5267927 ~ 5273602 (-)
G226048 NA non-coding upstream 31812 5294864 ~ 5295224 (-)
G226050 NA non-coding upstream 67972 5331024 ~ 5331240 (-)
G226052 NA non-coding upstream 76597 5339649 ~ 5339863 (-)
G226054 NA non-coding upstream 107988 5371040 ~ 5371314 (-)
cpm cpm,LOC106925010 other downstream 460131 4756921 ~ 4782759 (-)
LOC120553649 NA other downstream 703093 4529987 ~ 4539797 (-)
G225751 NA other downstream 1191699 4047316 ~ 4051191 (-)
G225652 NA other downstream 1431600 3675809 ~ 3811290 (-)
G225672 cand1,LOC106591200,LOC107725503,LOC107571724,LOC107694273,LOC107655592 other downstream 1438639 3800138 ~ 3804251 (-)
G226200 gns other upstream 1467255 6730307 ~ 6730782 (-)
tmem243b tmem243 other upstream 1810841 7073893 ~ 7086322 (-)
meig1 meig1 other upstream 1823892 7086944 ~ 7089168 (-)
usp44 usp44,LOC102783730 other upstream 2005985 7269037 ~ 7278324 (-)
LOC120553151 LOC107386793,LOC104950937 other upstream 2159113 7422165 ~ 7494307 (-)

Expression


Co-expression Network