prkcq (prkcq,LOC102789446)


Basic Information

Item Value
gene id prkcq
gene name prkcq,LOC102789446
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6660520 ~ 6686639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306694
AGCTGTTTGTGAGGGAGCCCGAGGAGCGCCTGGGAGTGAAGGGAAACATCAGACAGCACAATTTCTTCAGCAGCACTGACTGGAACTCCCTGGAACAACGGAAGGTGGCGCCGCCCTTCAGGCCAACATTAACGTCGCCCAGTGACTGCAGTAACTTTGACAAAGAGTTTATCAACGAGAAGCCCCGGCTGTCGTGTGCCGACCGGACGCTCATCAACAGCGTTGACCAGACGATGTTCAGAAACTTCTCCTTTGTCAACCCGGGGATGGCTCGCAACGCAGCACGCTGACAACGGGACCAACAACTTTACTACCTTACAAGCAAGCCGCTCAGACACAAACAGCACTTACTGTAACTAAAACAAACTGCAGAGACTTTAGACCATGAATGTCACAAAACTTAACTGTATCCGTAAACATGATGATAACCACTAAGGGGGCGTCCTGGGTGTAAGGCACATACAGCACAACTGTGACGGGATCTTTGTTGCATGTCTTTTCTGTCTCTAAATTTGAATTATAGAAAGATACCCACAAAAATCTTctagaaacagacaaacaacaaaaactgctgagacaaagacacaaagaacaTATACCAAGATATAAAAATGAACAGTCTGTTACAATGCCTGAGATATAATTTGTCTTAAGTAGTGGcatataattacctatagaatTCCACCTTAAAAGTATTCAACCCCCTTAACTTGCCTTTGTGCTTATCAGGGTGTGTTTATTAATAGACTGAATGTGTTGTAATGAACGTATGGTGCCTCATAATACTTTATGAAGTTCACTTCTTCAAGCAAAGCAAACTGAGAAATTTGGTTACACCAAATTCCAGCTATTGTcctgttattgttttatttcctgcCCTATTCCATAGCTTGAGTATTTTAAATCCATGTTGGGTACAGatgttaaaatataattaaacaaCCCTTGGTcgtgtaaataaatgtaatgtaattctgTCGATATACGGTACTGTCAGTTGGATGTAGATCTGTTATGATGGCGATGTGTAGCAGGTTTTTGTTTACGTGTTTTCTGTACCTCAGGAGTTTTATAGATACTATAATTTGGATCAGGTACTTAGAGCTGCATACTGTAGTTTTTATTGTTCTCTTCAATGTGAATCCTGCACaataaaatg
>XM_039791185.1
CTGCTCCCTCCGGTCTGTCAAGAGAAGTGCTCGGATGGAGAGCAGCGTCTGTCTGCGAACACTAAACTTCACTTGTCTTTTACAGGTCGTTTAAAGCGTCAAGGGTGGAAAACGGCAAACCTCCCCCTCTGCCAGACTTCTCTTTCCTCTGGAGGAAAAGAGGCAGTCGACGTGTGCTGCGGTGGAGGAAAGGTGGTTGACAGCGACACCGAAGCTGTCTCCCAAAATCTGAGTAATCTTATCTCTTGAAGCTGCTTTGCTAAGACGGCATCGTCGCGAAGGTTTCCTGGAGACTGTTTGGATATTTGCGCGGAGGTCAGAGAGTAAAAACCTGCAGCCATGTCTCCGTTCCTACGGATTGGGTTCTCCAGCTTTGAGATGGATCCCGGTCTGGCTTACCATGAAGAGGTGCTGAACCCGTACTGTGCGGTTTACATGAAGGAGGCCATCGACACAGAAAAGGGCCAAGTGCACAAGCAGAAGAAACCCACCATGTACCCGCCCTGGAGCACCACGTTTGATGCCCACGTCCACCGTGGTCGCATCATGCACGTGATGGTGAAGGACCGCACGGCAGAGCTGAAGTCTGAGGCTACGGTGGCTCTGGACTCGCTGGCAACGCGATGCAAGAAGGAGAACGGCAAGCTGGAGATCTGGCTGGAGCTGAAGCCACAGGGCCGCCTGCTGATGGAGGCCAAATACTATCTGGAGAAGAGTGACGCTGCAGGTCAGACTGAGGGAGACCCAGAGTCCGAACCAGAGAGGGAGGGTCTGTTCGCCCTCCATCAGCGGCGAGGGGCCATCAAACAGGCTAAAGTTCACGTTGTCAAATGTCACGAGTTCAGCGCCACGTTCTTCCCTCAACCGACCTTCTGCTCCGTCTGCAAAGAGTTTGTCTGGGGTCTTAACAAGCAGGGTTACCAGTGCAGACAGTGCAACGCAGCCATTCACAAAAAATGCATAGACAAAGTAATCGCTAAATGCACGGGTTCAGCCATTAACAGCAAAGAAACAATGATCCACAAGGAGCGCTTCAAGATTGACATGCCCCACAGGTTTAAGGTCTACAACTACAAAAGTCCCACTTTCTGTGAACACTGCGGTACTCTGCTGTGGGGGCTCGCCAAGCAGGGGCTCAAATGTGAGGAATGTAGCATGAACGTCCATCATAAATGCCAGAAGAAAGTAGCCAACCTCTGTGGGGTCAACCAAAAACTGATGGCTGAAGCTCTGGCCATGATCGAGAGTAAACAGCAGGCCGATGCTGGTCCTACCTTTTGTCAGGCCAGAAGCACCAGAGAAAGTGAAATCATTGGTCGAGAAGGTCCAGTAGGTGTTGGCCAGCCGGGCGTGGTCCGAGCTCCGTCTGGGTTAGTAACGGCTGTAACAGCCACAGCTCCACCTGCACCTGCAAACAAAGACTATCAGGGTGTGTCGTGGGATGGACCGACTGACGTCGGCAGGTCGATCACCGAGGCGCTGACAGAAGAGGCGCCGACAGAAGAGCCTCTGTACGCTGTTCCCAGGAAGGAGCACCAACCCAAATTCACCGTCGATGACTTCGTCCTGCACAAGATGCTCGGGAAAGGCAGCTTCGGCAAGGTGTTTTTAGCCGAGCTGAAAAAAAGCGGGCACTTTTACGCGGTGAAGGCTCTAAAAAAGGATGTGGTGCTGATGGACGATGATGTCGAGTGCACCATGGTGGAGAGGAGGGTCCTCTCTCTTGCCTGGGAAAACCCTTTCCTCACGCACCTTCACTGCACCTTCCAGACCAAGGAGAACCTGTTCTTCGTGATGGAGTATCTGAATGGAGGGGATCTCATGTTCCACATCCAGAACTGCCACAAGTTTGACTTGCACAGAGCCACCTTCTATGCAGCTGAGATCATCTGTGGGCTCCAGTTCCTGCACTCTAAAGGAATCATTTACAGGGATCTGAAGCTGGATAATGTGCTGCTGGACTCTGAGGGTCATATCAAGATAGCAGACTTTGGCATGTGTAAGGAGAACATGCAGGACGAGTCACGCACCTCCACCTTCTGTGGGACACCCGACTACATCGCTCCAGAGATCCTGCTGGGTCAGAAGTACAACAGCTCAGTGGACTGGTGGTCGTTTGGAGTGCTGCTGTACGAGATGCTGATCGGTCAGTCTCCGTTCCACGGCCGCGATGAAGAGGAGCTGTTTCAATCCATACGAACTGACAACCCCGTTTATCCCCGCTGGCTCACCAAAGACGCCAAGAACATTCTGATCGAGCTGTTTGTGAGGGAGCCCGAGGAGCGCCTGGGAGTGAAGGGAAACATCAGACAGCACAATTTCTTCAGCAGCACTGACTGGAACTCCCTGGAACAACGGAAGGTGGCGCCGCCCTTCAGGCCAACATTAACGTCGCCCAGTGACTGCAGTAACTTTGACAAAGAGTTTATCAACGAGAAGCCCCGGCTGTCGTGTGCCGACCGGACGCTCATCAACAGCGTTGACCAGACGATGTTCAGAAACTTCTCCTTTGTCAACCCGGGGATGGCTCGCAACGCAGCACGCTGACAACGGGACCAACAACTTTACTACCTTACAAGCAAGCCGCTCAGACACAAACAGCACTTACTGTAACTAAAACAAACTGCAGAGACTTTAGACCATGAATGTCACAAAACTTAACTGTATCCGTAAACATGATGATAACCACTAAGGGGGCGTCCTGGGTGTAAGGCACATACAGCACAACTGTGACGGGATCTTTGTTGCATGTCTTTTCTGTCTCTAAATTTGAATTATAGAAAGATACCCACAAAAATCTTctagaaacagacaaacaacaaaaactgctgagacaaagacacaaagaacaTATACCAAGATATAAAAATGAACAGTCTGTTACAATGCCTGAGATATAATTTGTCTTAAGTAGTGGcatataattacctatagaatTCCACCTTAAAAGTATTCAACCCCCTTAACTTGCCTTTGTGCTTATCAGGGTGTGTTTATTAATAGACTGAATGTGTTGTAATGAACGTATGGTGCCTCATAATACTTTATGAAGTTCACTTCTTCAAGCAAAGCAAACTGAGAAATTTGGTTACACCAAATTCCAGCTATTGTcctgttattgttttatttcctgcCCTATTCCATAGCTTGAGTATTTTAAATCCATGTTGGGTACAGatgttaaaatataattaaacaaCCCTTGGTcgtgtaaataaatgtaatgtaattctgTCGATATACGGTACTGTCAGTTGGATGTAGATCTGTTATGATGGCGATGTGTAGCAGGTTTTTGTTTACGTGTTTTCTGTACCTCAGGAGTTTTATAGATACTATAATTTGGATCAGGTACTTAGAGCTGCATACTGTAGTTTTTATTGTTCTCTTCAATGTGAATCCTGCACaataaaatgtctgtttttttaga
>XM_039791186.1
CTGCTCCCTCCGGTCTGTCAAGAGAAGTGCTCGGATGGAGAGCAGCGTCTGTCTGCGAACACTAAACTTCACTTGTCTTTTACAGGTCGTTTAAAGCGTCAAGGGTGGAAAACGGCAAACCTCCCCCTCTGCCAGACTTCTCTTTCCTCTGGAGGAAAAGAGGCAGTCGACGTGTGCTGCGGTGGAGGAAAGGTGGTTGACAGCGACACCGAAGCTGTCTCCCAAAATCTGAGTAATCTTATCTCTTGAAGCTGCTTTGCTAAGACGGCATCGTCGCGAAGGTTTCCTGGAGACTGTTTGGATATTTGCGCGGAGGTCAGAGAGTAAAAACCTGCAGCCATGTCTCCGTTCCTACGGATTGGGTTCTCCAGCTTTGAGATGGATCCCGGTCTGGCTTACCATGAAGAGGTGCTGAACCCGTACTGTGCGGTTTACATGAAGGAGGCCATCGACACAGAAAAGGGCCAAGTGCACAAGCAGAAGAAACCCACCATGTACCCGCCCTGGAGCACCACGTTTGATGCCCACGTCCACCGTGGTCGCATCATGCACGTGATGGTGAAGGACCGCACGGCAGAGCTGAAGTCTGAGGCTACGGTGGCTCTGGACTCGCTGGCAACGCGATGCAAGAAGGAGAACGGCAAGCTGGAGATCTGGCTGGAGCTGAAGCCACAGGGCCGCCTGCTGATGGAGGCCAAATACTATCTGGAGAAGAGTGACGCTGCAGGTCAGACTGAGGGAGACCCAGAGTCCGAACCAGAGAGGGAGGGTCTGTTCGCCCTCCATCAGCGGCGAGGGGCCATCAAACAGGCTAAAGTTCACGTTGTCAAATGTCACGAGTTCAGCGCCACGTTCTTCCCTCAACCGACCTTCTGCTCCGTCTGCAAAGAGTTTGTCTGGGGTCTTAACAAGCAGGGTTACCAGTGCAGACAGTGCAACGCAGCCATTCACAAAAAATGCATAGACAAAGTAATCGCTAAATGCACGGGTTCAGCCATTAACAGCAAAGAAACAATGATCCACAAGGAGCGCTTCAAGATTGACATGCCCCACAGGTTTAAGGTCTACAACTACAAAAGTCCCACTTTCTGTGAACACTGCGGTACTCTGCTGTGGGGGCTCGCCAAGCAGGGGCTCAAATGTGAGGAATGTAGCATGAACGTCCATCATAAATGCCAGAAGAAAGTAGCCAACCTCTGTGGGGTCAACCAAAAACTGATGGCTGAAGCTCTGGCCATGATCGAGAGTAAACAGCAGGCCAGAAGCACCAGAGAAAGTGAAATCATTGGTCGAGAAGGTCCAGTAGGTGTTGGCCAGCCGGGCGTGGTCCGAGCTCCGTCTGGGTTAGTAACGGCTGTAACAGCCACAGCTCCACCTGCACCTGCAAACAAAGACTATCAGGGTGTGTCGTGGGATGGACCGACTGACGTCGGCAGGTCGATCACCGAGGCGCTGACAGAAGAGGCGCCGACAGAAGAGCCTCTGTACGCTGTTCCCAGGAAGGAGCACCAACCCAAATTCACCGTCGATGACTTCGTCCTGCACAAGATGCTCGGGAAAGGCAGCTTCGGCAAGGTGTTTTTAGCCGAGCTGAAAAAAAGCGGGCACTTTTACGCGGTGAAGGCTCTAAAAAAGGATGTGGTGCTGATGGACGATGATGTCGAGTGCACCATGGTGGAGAGGAGGGTCCTCTCTCTTGCCTGGGAAAACCCTTTCCTCACGCACCTTCACTGCACCTTCCAGACCAAGGAGAACCTGTTCTTCGTGATGGAGTATCTGAATGGAGGGGATCTCATGTTCCACATCCAGAACTGCCACAAGTTTGACTTGCACAGAGCCACCTTCTATGCAGCTGAGATCATCTGTGGGCTCCAGTTCCTGCACTCTAAAGGAATCATTTACAGGGATCTGAAGCTGGATAATGTGCTGCTGGACTCTGAGGGTCATATCAAGATAGCAGACTTTGGCATGTGTAAGGAGAACATGCAGGACGAGTCACGCACCTCCACCTTCTGTGGGACACCCGACTACATCGCTCCAGAGATCCTGCTGGGTCAGAAGTACAACAGCTCAGTGGACTGGTGGTCGTTTGGAGTGCTGCTGTACGAGATGCTGATCGGTCAGTCTCCGTTCCACGGCCGCGATGAAGAGGAGCTGTTTCAATCCATACGAACTGACAACCCCGTTTATCCCCGCTGGCTCACCAAAGACGCCAAGAACATTCTGATCGAGCTGTTTGTGAGGGAGCCCGAGGAGCGCCTGGGAGTGAAGGGAAACATCAGACAGCACAATTTCTTCAGCAGCACTGACTGGAACTCCCTGGAACAACGGAAGGTGGCGCCGCCCTTCAGGCCAACATTAACGTCGCCCAGTGACTGCAGTAACTTTGACAAAGAGTTTATCAACGAGAAGCCCCGGCTGTCGTGTGCCGACCGGACGCTCATCAACAGCGTTGACCAGACGATGTTCAGAAACTTCTCCTTTGTCAACCCGGGGATGGCTCGCAACGCAGCACGCTGACAACGGGACCAACAACTTTACTACCTTACAAGCAAGCCGCTCAGACACAAACAGCACTTACTGTAACTAAAACAAACTGCAGAGACTTTAGACCATGAATGTCACAAAACTTAACTGTATCCGTAAACATGATGATAACCACTAAGGGGGCGTCCTGGGTGTAAGGCACATACAGCACAACTGTGACGGGATCTTTGTTGCATGTCTTTTCTGTCTCTAAATTTGAATTATAGAAAGATACCCACAAAAATCTTctagaaacagacaaacaacaaaaactgctgagacaaagacacaaagaacaTATACCAAGATATAAAAATGAACAGTCTGTTACAATGCCTGAGATATAATTTGTCTTAAGTAGTGGcatataattacctatagaatTCCACCTTAAAAGTATTCAACCCCCTTAACTTGCCTTTGTGCTTATCAGGGTGTGTTTATTAATAGACTGAATGTGTTGTAATGAACGTATGGTGCCTCATAATACTTTATGAAGTTCACTTCTTCAAGCAAAGCAAACTGAGAAATTTGGTTACACCAAATTCCAGCTATTGTcctgttattgttttatttcctgcCCTATTCCATAGCTTGAGTATTTTAAATCCATGTTGGGTACAGatgttaaaatataattaaacaaCCCTTGGTcgtgtaaataaatgtaatgtaattctgTCGATATACGGTACTGTCAGTTGGATGTAGATCTGTTATGATGGCGATGTGTAGCAGGTTTTTGTTTACGTGTTTTCTGTACCTCAGGAGTTTTATAGATACTATAATTTGGATCAGGTACTTAGAGCTGCATACTGTAGTTTTTATTGTTCTCTTCAATGTGAATCCTGCACaataaaatgtctgtttttttaga

Function

symbol description
prkcq Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Located in immunological synapse. Is expressed in Mauthner neurons; brain; somite border; and spinal cord. Orthologous to human PRKCQ (protein kinase C theta).

NR:

description
PREDICTED: protein kinase C theta type isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18052 PRKCQ; novel protein kinase C theta type

RNA

RNA id representative length rna type GC content exon number start site end site
TU306694 False 1159 lncRNA 0.41 2 6682718 6686625
XM_039791185.1 True 3430 mRNA 0.49 18 6660520 6686639
XM_039791186.1 False 3403 mRNA 0.49 18 6660520 6686639

Neighbor

gene id symbol gene type direction distance location
sfmbt2 sfmbt2 coding upstream 23839 6579112 ~ 6636681 (+)
itih5 itih5 coding upstream 107434 6535175 ~ 6553086 (+)
kin kin,LOC103372864 coding upstream 141068 6513845 ~ 6519452 (+)
echdc3 echdc3,LOC102797483 coding upstream 1261217 5393640 ~ 5399303 (+)
kcnj8 kcnj8 coding upstream 1267580 5383033 ~ 5392940 (+)
gnsa gns,LOC102788091 coding downstream 32469 6719108 ~ 6734409 (+)
LOC120553270 NA coding downstream 289693 6976332 ~ 6995588 (+)
LOC120553268 NA coding downstream 289768 6976407 ~ 7012280 (+)
cd9b LOC103364503,LOC102202019,LOC101471915,LOC102790892,LOC100690342,LOC102311668 coding downstream 365216 7051855 ~ 7073003 (+)
dclre1c dclre1c,LOC106595997 coding downstream 402701 7089340 ~ 7100004 (+)
LOC120553621 NA non-coding upstream 159460 6429094 ~ 6501060 (+)
LOC120553126 NA non-coding upstream 370621 6183044 ~ 6289899 (+)
G226097 NA non-coding upstream 562612 6097678 ~ 6097908 (+)
G226085 NA non-coding upstream 741106 5919094 ~ 5919414 (+)
G226042 NA non-coding upstream 884087 5750128 ~ 5776433 (+)
G226292 eri1,LOC102785739 non-coding downstream 470851 7157490 ~ 7157887 (+)
G226306 ndufa12 non-coding downstream 526753 7213392 ~ 7216386 (+)
G226316 NA non-coding downstream 580870 7267509 ~ 7268758 (+)
G226317 NA non-coding downstream 582465 7269104 ~ 7270753 (+)
G226318 NA non-coding downstream 584678 7271317 ~ 7271707 (+)
abcc9 abcc9,LOC107387088 other upstream 1286883 5281258 ~ 5373637 (+)
G225894 NA other upstream 2002551 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 2721566 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 2819346 3814481 ~ 3841174 (+)
trnat-ugu_40 NA other upstream 3125848 3534600 ~ 3534672 (+)
snrpf snrpf,LOC106576293 other downstream 631878 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 636431 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 676686 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 683803 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 736979 7423618 ~ 7426254 (+)

Expression


Co-expression Network