LOC120553101


Basic Information

Item Value
gene id LOC120553101
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 6634650 ~ 6688822 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306756
CGGCATGTAACTTCCTGTTGCcatctttgtttacattaatGAACAGCCGCATCTTGTGAAGCGAGTTAAATGCATGGGTGTAATATAAGAACGGTTAGGTACACGTCCTTGTCTAAAGAGCGAAATATGTTTGCCACAAGAGTGTTTCAGGAGTGCGGAAATGTCTTTAAAGCGGCGCTGCCTTTCCCGAGCATCTTGTGCAGGACGAAGTCATCGACGGTGAATTTGGGTTGGTGCTCCTTCCTGGGAACAGCGTACAGAGGCTCTTCTGTCGGCGCCTCTTCTGTCAGCGCCTCGGTGATCGACCTGCCGACGTCAGTCGGTCCATCCCACGACACACCCTGATAGTCTTCAGGTGCAGGTGGAGCTGTGGCTGTTACAGCCGTTACTAACCCAGACGGAGCTCGGACCACGCCCGGCTGGCCAACACCTACTGGACCTTCTCGACCAATGATTTCACTTTCTCTGGTGCTTCTGGCCTGACAAAAGATGTTGGCCAGGGACGCACAGTCAGTAGAGTTGATAAACTGAACGACTTCGTCTACGCTCCACTCCAGAGGATTTCTGTCCAAAACCAGctgaccctcctcctcctccaccacctgacacacacataaaaaacacacgTGTTGTTTGGGCAGATAAAGTATAATGtgatatagtatatataagacAGAATATGGTCAATATTAAACAATCCATGGTGGTAAAACATTCTTGTTCAAGTAAGTTTTTTAataagggctgcaactaacgatctaccgcaagaaaaaaaaaattctcccaAAAATCAACCAGAAG
>XR_005638098.1
tcttgcctcgtagtacaggcctctgttTAACCaatttcttaatttgtgtttcaTCCAAACAAAGATTGTAGCTGGAATTGACATATTGTTGCTATTAATTctggaaaaaatataaatgaaaaaattaaatgtttaaatattaaattaatttaaaaccaAAGTTAGTCTACAGTAGGTATCTTTCTTATTTAAATTTCCATGCATCATTTaataaacgtttttttgtttactGCATCCTGCATCACTCGAGGGGGAGGAAAAATAAGTGCGCGCATAGGCGGCATGTAACTTCCTGTTGCcatctttgtttacattaatGAACAGCCGCATCTTGTGAAGCGAGTTAAATGCATGGGTGTAATATAAGAACGGTTAGGTACACGTCCTTGTCTAAAGAGCGAAATATGTTTGCCACAAGAGTGTTTCAGGAGTGCGGAAATGTCTTTAAAGCGGCGCTGCCTTTCCCGAGCATCTTGTGCAGGACGAAGTCATCGACGGTGAATTTGGGTTGGTGCTCCTTCCTGGGAACAGCGTACAGAGGCTCTTCTGTCGGCGCCTCTTCTGTCAGCGCCTCGGTGATCGACCTGCCGACGTCAGTCGGTCCATCCCACGACACACCCTGATAGTCTTCAGGTGCAGGTGGAGCTGTGGCTGTTACAGCCGTTACTAACCCAGACGGAGCTCGGACCACGCCCGGCTGGCCAACACCTACTGGACCTTCTCGACCAATGATTTCACTTTCTCTGGT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306756 True 801 lncRNA 0.47 4 6634650 6688544
XR_005638098.1 False 748 lncRNA 0.44 3 6679376 6688822

Neighbor

gene id symbol gene type direction distance location
tmem110l LOC101465056,LOC103375076,LOC102308360,LOC100692898,LOC102790606 coding downstream 60168 6553458 ~ 6574482 (-)
itih2 itih2 coding downstream 100989 6519357 ~ 6533661 (-)
atp5f1c atp5c1 coding downstream 121482 6506578 ~ 6513168 (-)
gata3 gata3,LOC102792415 coding downstream 201924 6417232 ~ 6432726 (-)
celf2 celf2,LOC106927059,LOC103370671,LOC107092344,LOC101484207,LOC100706659,LOC106576215,LOC106609337 coding downstream 844358 5552494 ~ 5790292 (-)
tbc1d30 tbc1d30,LOC102788373 coding upstream 1752 6690574 ~ 6717944 (-)
zgc:194209 LOC103375033,LOC102787798,LOC102205194,LOC101467670 coding upstream 47784 6736606 ~ 6745985 (-)
rassf3 rassf3,LOC102298244,LOC102210289,LOC103364097,LOC106956171,LOC103129390 coding upstream 58679 6747501 ~ 6823905 (-)
LOC120553692 NA coding upstream 135699 6824521 ~ 6831712 (-)
dgki NA coding upstream 151318 6840140 ~ 6920612 (-)
G226113 NA non-coding downstream 192326 6442038 ~ 6442324 (-)
G226083 NA non-coding downstream 800436 5833734 ~ 5834214 (-)
G226074 NA non-coding downstream 1080235 5553966 ~ 5554415 (-)
G226070 NA non-coding downstream 1187077 5446741 ~ 5447573 (-)
G226054 NA non-coding downstream 1263336 5371040 ~ 5371314 (-)
G226199 NA non-coding upstream 43616 6732438 ~ 6735270 (-)
G226216 NA non-coding upstream 235209 6924031 ~ 6926245 (-)
G226244 NA non-coding upstream 339926 7028748 ~ 7028958 (-)
G226259 NA non-coding upstream 375803 7064625 ~ 7072997 (-)
G226273 NA non-coding upstream 413116 7101938 ~ 7107207 (-)
LOC120553807 LOC104934913 other downstream 1371598 5242890 ~ 5263052 (-)
cpm cpm,LOC106925010 other downstream 1851891 4756921 ~ 4782759 (-)
LOC120553649 NA other downstream 2094853 4529987 ~ 4539797 (-)
G225751 NA other downstream 2583459 4047316 ~ 4051191 (-)
G225672 cand1,LOC106591200,LOC107725503,LOC107571724,LOC107694273,LOC107655592 other downstream 2830399 3800138 ~ 3804251 (-)
G226200 gns other upstream 41485 6730307 ~ 6730782 (-)
tmem243b tmem243 other upstream 385071 7073893 ~ 7086322 (-)
meig1 meig1 other upstream 398122 7086944 ~ 7089168 (-)
usp44 usp44,LOC102783730 other upstream 580215 7269037 ~ 7278324 (-)
LOC120553151 LOC107386793,LOC104950937 other upstream 733343 7422165 ~ 7494307 (-)

Expression


Co-expression Network