G226292 (eri1,LOC102785739)


Basic Information

Item Value
gene id G226292
gene name eri1,LOC102785739
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7157490 ~ 7157887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306925
TGTTATTCCGGTTAACTTCACACAAAAGTCTGAAAGCTGTGGGTTCAACTCTGGTTTCACATATGCCTGAAAGGAGTCCACCTGAATTTCTAAGGTGTGCGTGTTGATAAGAACCATGGGGAACTCAATGATTTCATGATGGAAGTCTGAGGGATTATCCTCTTCACATGTTGCTTCAAAGTCCACCACGCAGATGTAGTCATAGTAGGTGTCAGTGGGTCCTCCCTCAGATGCAGACTGCAGAAGCTTCTGCTTCTTATAGTGGCTCTTCAACCTCTTCTTCATCACATCCTTTACACCTCTTTa

Function

symbol description
eri1 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within gene silencing by RNA. Predicted to be active in cytoplasm and nucleolus. Orthologous to human ERI1 (exoribonuclease 1).

NR:

description
PREDICTED: 3'-5' exoribonuclease 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306925 True 306 lncRNA 0.44 2 7157490 7157887

Neighbor

gene id symbol gene type direction distance location
trnaw-cca_35 NA coding upstream 10150 7147269 ~ 7147340 (+)
lamb1b lamb1,LOC103364103 coding upstream 13485 7115962 ~ 7144005 (+)
dclre1c dclre1c,LOC106595997 coding upstream 57486 7089340 ~ 7100004 (+)
cd9b LOC103364503,LOC102202019,LOC101471915,LOC102790892,LOC100690342,LOC102311668 coding upstream 84487 7051855 ~ 7073003 (+)
LOC120553268 NA coding upstream 145210 6976407 ~ 7012280 (+)
vezt vezt coding downstream 82965 7240852 ~ 7255885 (+)
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding downstream 99383 7257270 ~ 7267450 (+)
pah pah coding downstream 352077 7509964 ~ 7524419 (+)
LOC120553155 pah coding downstream 388541 7546428 ~ 7562205 (+)
LOC120553589 parpbp,LOC102779589 coding downstream 434992 7592879 ~ 7605838 (+)
LOC120553621 NA non-coding upstream 656430 6429094 ~ 6501060 (+)
LOC120553126 NA non-coding upstream 867591 6183044 ~ 6289899 (+)
G226097 NA non-coding upstream 1059582 6097678 ~ 6097908 (+)
G226085 NA non-coding upstream 1238076 5919094 ~ 5919414 (+)
G226042 NA non-coding upstream 1381057 5750128 ~ 5776433 (+)
G226306 ndufa12 non-coding downstream 55505 7213392 ~ 7216386 (+)
G226316 NA non-coding downstream 109622 7267509 ~ 7268758 (+)
G226317 NA non-coding downstream 111217 7269104 ~ 7270753 (+)
G226318 NA non-coding downstream 113430 7271317 ~ 7271707 (+)
G226319 usp44 non-coding downstream 114190 7272077 ~ 7272316 (+)
prkcq prkcq,LOC102789446 other upstream 470851 6660520 ~ 6686639 (+)
abcc9 abcc9,LOC107387088 other upstream 1783853 5281258 ~ 5373637 (+)
G225894 NA other upstream 2499521 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 3218536 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 3316316 3814481 ~ 3841174 (+)
snrpf snrpf,LOC106576293 other downstream 160630 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 165183 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 205438 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 212555 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 265731 7423618 ~ 7426254 (+)

Expression


Co-expression Network