G226316


Basic Information

Item Value
gene id G226316
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7267509 ~ 7268758 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306965
ATCACATATTCCCTCATCATATGGCTTGTTTTTGTCTAGCTAGCAGGTTTTCAGTTTACCGTCATAGAAGACTTAAGAAAACCAGCAAATActtacatttaagaagctggagaaagtgattgtttgatatttagggggaatacacatttttaaagacagtttgatgagaagatAGATACatataacattttaaacattaagctaacagctagcatCAGTTAGGGTGAACCACTACAggcaaaacaatgttttttttcatgcactGGTAATTTTTAAAATGGGTTATTTTGAATCTATTCTTTCAGATTAGTGGGGGGAAAAATactcaaaatacacatttaggtgtttattttactacactttgtctatttgcacctGTAAATTTCTTCTAAATTCACTGACACTTAGCATAGGATAATGccttatttgcatatttaaacttgaaatacaaaaaaagaattgtctttaagtaatcaactggggaagtttcatggtaATATGTTAGTTAAAATTGTTTACTCTGTTCCCCTGTTGAGTCTTGCAAAAATGAAAAGTATGAATTTTACAATACATATCTTTAGAGGGCTGTTTTCTCAAATCTAGTTTGTTGTCATACTCTGAGCCAGAAATCTGCACTCCaataaatggactgtatttatatacagACCACTCGTTTTAATAGTAaagccattcacacacattcatacacttgcccaaggacacttcaacgtgcagggccagggatcgaaccaccaaccttctgattggtagaggaccgctctaccacctgagccacagccaccccaATAGCAAGTAGTACTCCCATACACTTAACTTTGCACTTTGTATtcctactgtatgtatattttaaatgttattacaGAGGGGTTTATTCATTCATCTGCTGAGTTACATACCATTTATTTCTAAAA
>TU306966
AGTGAATATCTTGACAGCTGAAACTATTAGTGGATTTATTagtaaacaaattattttttttgagttAGCTGAGAAAGCTCAATACCATACATCTGTCCATTAAACATAAAGCTAGTAACTCTTTCATGTTAATTAAATTTAAACTTAATCTATCACTACTAAAGCCAGTGGTTTTACTTTATATTTACTTCAGCGGTTCAGATttaggctgcaactaacaattatatTGGATTATAGAGTATTCAATAATCAGCTTTTTTATTATCTCGTTTACTCAGTTTTAGTGTATAAACTGTCACAAAATAGTGATTAATTTCCATCACATATTCCCTCATCATATGGCTTGTTTTTGTCTAGCTAGCAGGTTTTCAGTTTACCGTCATAGAAGACTTAAGAAAACCAGCAAATActtacatttaagaagctggagaaagtgattgtttgatatttagggggaatacacatttttaaagacagtttgatgagaagatAGATACatataacattttaaacattaagctaacagctagcatCAGTTAGGGTGAACCACTACAggcaaaacaatgttttttttcatgcactGGTAATTTTTAAAATGGGTTATTTTGAATCTATTCTTTCAGATTAGTGGGGGGAAAAATactcaaaatacacatttaggtgtttattttactacactttgtctatttgcacctGTAAATTTCTTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306965 True 932 lncRNA 0.34 1 7267827 7268758
TU306966 False 711 lncRNA 0.30 1 7267509 7268219

Neighbor

gene id symbol gene type direction distance location
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 59 7257270 ~ 7267450 (+)
vezt vezt coding upstream 11624 7240852 ~ 7255885 (+)
trnaw-cca_35 NA coding upstream 120169 7147269 ~ 7147340 (+)
lamb1b lamb1,LOC103364103 coding upstream 123504 7115962 ~ 7144005 (+)
dclre1c dclre1c,LOC106595997 coding upstream 167505 7089340 ~ 7100004 (+)
pah pah coding downstream 241206 7509964 ~ 7524419 (+)
LOC120553155 pah coding downstream 277670 7546428 ~ 7562205 (+)
LOC120553589 parpbp,LOC102779589 coding downstream 324121 7592879 ~ 7605838 (+)
LOC120553463 LOC103356656 coding downstream 601003 7869761 ~ 7887525 (+)
tnnt2c LOC102777397 coding downstream 626787 7895545 ~ 7897483 (+)
G226306 ndufa12 non-coding upstream 51123 7213392 ~ 7216386 (+)
G226292 eri1,LOC102785739 non-coding upstream 109622 7157490 ~ 7157887 (+)
LOC120553621 NA non-coding upstream 766449 6429094 ~ 6501060 (+)
LOC120553126 NA non-coding upstream 977610 6183044 ~ 6289899 (+)
G226097 NA non-coding upstream 1169601 6097678 ~ 6097908 (+)
G226317 NA non-coding downstream 346 7269104 ~ 7270753 (+)
G226318 NA non-coding downstream 2559 7271317 ~ 7271707 (+)
G226319 usp44 non-coding downstream 3319 7272077 ~ 7272316 (+)
G226352 NA non-coding downstream 66296 7335054 ~ 7346162 (+)
G226452 igf1 non-coding downstream 347430 7616188 ~ 7707570 (+)
prkcq prkcq,LOC102789446 other upstream 580870 6660520 ~ 6686639 (+)
abcc9 abcc9,LOC107387088 other upstream 1893872 5281258 ~ 5373637 (+)
G225894 NA other upstream 2609540 4657444 ~ 4657969 (+)
LOC120553793 NA other upstream 3328555 3935674 ~ 3938954 (+)
LOC120553144 rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 other upstream 3426335 3814481 ~ 3841174 (+)
snrpf snrpf,LOC106576293 other downstream 49759 7318517 ~ 7321189 (+)
amdhd1 amdhd1 other downstream 54312 7323070 ~ 7332259 (+)
klhl42 klhl42 other downstream 94567 7363325 ~ 7368216 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 101684 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 154860 7423618 ~ 7426254 (+)

Expression


Co-expression Network