usp44 (usp44,LOC102783730)


Basic Information

Item Value
gene id usp44
gene name usp44,LOC102783730
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7269037 ~ 7278324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU306994
CCTCTCTTCTCCAAAATGTAATTGTCTTCAGAGTGTGAATCATTCCCAAACCACACGCGTACTAGTGTACTAGAAAAGTGCCCTTTGTTGAGAGTATATTTTTGTAGTTCATATCAATTCAGAAAAGTGGAATCTGCACAGTGGCAGTCCCATGCAAGACCAGCATTTAgattttgaatgtatttttatacaATCCTTCTCAGAAGTTTTAGAAAAGAGGCCATTGACTGTTCTGAAAGGTTTTATACAACCGCCGATTgttcaccaccaccagcagttATGACTGTTCTATCACCATTAAGTaggtgtgtgtactgtatgtgtacataCTGTGTTTTATTTACCATCTGTTAAGTACAATATCCAGATTTAACAGGATTTCTGGAGTATATGCAGATTGTGATATTTATCTCCATACTGGAGAaaattgtacaaaaaaaaaggtattctCCACCTCAACCAAGTTCCCTCTGACTTATCTTTCAGAGGGGAATTCAAAGCACAGTTCATATTGTTTCTTCTTCATTGTCAGACGTTGTGACACATTTTTGGTTACTACtccatggatgtgtgtgtgtgtgtgagaatttaTGGAAGTTATACTATGCAAATGGtta
>TU306995
cctggtTCTGCTTTGTGAACTTGTTGTATAGTGTTTATATGTAGGtattttttaaaagacaaatgGTGATGTTTGTGATTTGTGTACAGTTGTATTTTATAAAGAGTATCAGCCAAGATGTGTCTCAGTAGCAGCCAACCGACTCAAGTGTCCTCTACAGGTCGTATACAGGTGTATTCACGTGTCTGCCTCCCTGCGTTTGGTGGATGTCGACTGTaaatgctgtttgttttttgtttttgaatcaACTGAAATGTCTCTCAGTCACTTTAGATAGTCGTCACAGAACTGGATGTAGGGTTGTAAAATGTCATTCACTCGCTAGAAATGGCCTCGCTGTGTTCTAGACAGGTTACGTTTTGATGGATGTTGACCACGACGGCTGTATTTCCTGCCAGAAATGCATTAATTTCTACAGAATAGGCAGTCAGCATTGTTTTAACTCCTGTTTATAGCTGAAGATCTGTACACGAGCAGGGCAGGaagtttatttttctctctgaaGTACTCCTGGGTCTGTCAGGGAAAATTGGCAGAGCTCAAGCCAAAGCCGGGGGATAAGTGTATGGA
>XM_039791598.1
ataagttaaacaacaacaacaacgtcaCGTATAGAGGACGCGCTCGAGGCAACACCACGCGACAGGGACTGACAAGATGGCGATCATTTTGGAAACAGAAGAGTTGCTGCCATGAAGGAGAGGCTAAaAACCACCATGCCCTGGGAGGGTCCCATTTCTCAGCTCACCATGGTCACCATGGTGATATGAAGCCAGTGTGAAACAttgacacacagactcacacacagacagtcagtAATTGACTGacacagccagccagccagctcgGCCGGCAGGCAGGCGTGTGTAATGGATAGGTGTAAGCATGTGGGGCGGCTTCGGCTGGCCCCAGACCACTCCATCCTCAACCCCCAGAAGTGGCACTGCGTGGACTGCAACACCAGCGAGTCTATATGGGCCTGCCTGGGCTGTGCTCATGTGGCGTGTGGGCGCTACATCGAGGAACATGCTCTGCAGCActtccagcagcagcaccacccGTTGGCTATGGAGGTTAATGAACTTTACGTTTTTTGTTACTTGTGTGACGACTATGTCCTCAATGATAACGCCACCGGAGACCTGAAGCTGCTTCGTAGTACGCTCAGCGCCATCCAGAGCCAGCACTATGAGGTTACCACCCGCAGTGGGCGCACCCTCCGCTCTGCTAGTGCTGCCCCCGATGCCCTCATGCCATCCGGTGCCCGCGAGCTGCAGCTGAGGGACGAGGACAGGATGTTTACTGCGCTCTGGCACCGCCGCAGGGTGCTTATGGGACGTGTCTTTCGCTTATGGTTTGCACTGACTGAATGCGGAaagaagagggaggaagaagagagaaagagggaggaggaggaggagcagaaaaGGGAGGCGAGGGAGAGGAGGCAGGCTCTAAAGAGGCAGCTacaggaggagctggagaaTGCCCCTCTCAGGAAGAGTCGGCGGTTACGTAAGAGAAGCCAGAGAGTTGCAGATGCTGCAGTTGCCACACCGTCGCGGAGGGCATGCAACAAGACAAAAACCCCTGTGCCCCCGTCTCTCACCCGCAGGCCAAGGACTCAAAGCCCTGCCACTGCTACCCCCAAGAAAGGTGGACGGACGAAAAAGGTCCAACCAACTTCCAAACCCCGGCGCCGTTCTTCTACCACCAAATCTAAGCCCAAAACACCCTCAGCGACCCCCCGTTCTGCTCAAACGCCTGTTCGCCGCAAGCAGAGTACCAAACAGGGTGGCTCACCCTTCAAACGGCGTCCCACAGTCACTCCTGGAGTGACAGGCCTGAGGAATTTAGGCAACACCTGTTACATGAATTCCATCCTGCAGGTTCTGAGCCACCTTCATGTCTTCAGGGAGTGCTTTCTGCGCCTGGATCTGACCCAAGCACTGGAACTACTAGCATCTGCCGTCCACGGCCAACTGGCAGGGAAGCCCTCTTCCCAGTCCCCCCTGATCCAAAGGAAGGGATTCCAGGCCAGCTCAGGCTCTGGGGCAGGGCTGAGCGGTGGGGCCTCACGGGCCCGCAGCATGGAGCTGATACAACCCAAAGAGCCCAGCTCAAAGCACATCTCGCTCTGCCACGAGCTGCACACCTTGTTCCAGGTTATGTGGTCTGGCAAGTGGGCGCTGGTATCGCCTTTTGCCATGCTCCACTCGGTGTGGCAGCTGATCCCGGCGTTCAGGGGCTACGCTCAGCAGGATGCTCAGGAGTTCCTGTGTGAGCTGCTGGACAAGGTGCAGCACGAGCTGGAGAGCACCGGCAAGCACACAACCACTGCAGGAGTCCCACAGAAACGCCTCATCAAACAGGTGCTCAGCGTGGTCAACACCATCTTTCATGGCCAACTCCTCAGCCAgGTGACGTGCCTGGCCTGCGAACATCGCTCCAACACTGTGGAGCCTTTCTGGGATCTGTCGCTGGAGTTCCCCGAGCGCTATCACAGTAACAGCAGGGAGCATGCTGCTCAGGCTTCGTGCCATTTGACGGAAATGCTGGCCAAGTTCACGGAGACTGAAGCTCGGAAGGAAAAAACCCCCCCCCGCAGGGTGGTTAttgCTGCTCGACGGCGGACCTCCTCCAAACCAGTCCTCCTGACTGAAGCACAAAAACAGCTGATGGTCCACAAACTGCCTCAGGTCCTGCGGCTTCACCTCAAACGCTTCAGGTGGTCTGGGCGGAACCACCGGGAGAAGATCGGAGTCCACGTCAGCTTCGACCAGCTTCTCAACATGGAGCCCTACTGCTGCCGAGAGCCCTCACCCAAAGGTGTGCCCTGCTCCAGTCCCAGCAGCCCCAGCTCTGCAGGCTCGCCACGCCCAAAGCACTTCCTCTACGACCTCTCCGCTGTGGTGATGCATCATGGGAAGGGCTTCGGCTCTGGCCACTACACCTCCTACTGCTACAACACAGAAGGTGGCTTCTGGGTTCACTGTAATGACTCTAAGCTGAATGTGTGTTCAGTGGAGGAGGTCTGTCGTGCTCAGGCCTACATCCTCTTCTACACACAGCGAGTAACTCAGGACAAAGACCGGCCGCTATGAGACCACAATCCCCCACCTCATCCTCCTCAGCTGCAGCCTGACCACTCAGCGAGAAGATATCAGCACAGCCCCACctatcgctctctctctctcttccctctttctttggGCATTTTATATCCTGGGAGGATGGGTCTTTTTAgtctatttttctaaataagaaaaaaaaaaaaaaaaaaagaggaaggactcttttttttaaaaacctggtTCTGCTTTGTGAACTTGTTGTATAGTGTTTATATGTAGGtattttttaaaagacaaatgGTGATGTTTGTGATTTGTGTACAGTTGTATTTTATAAAGAGTATCAGCCAAGATGTGTCTCAGTAGCAGCCAACCGACTCAAGTGTCCTCTACAGGTCGTATACAGGTGTATTCACGTGTCTGCCTCCCTGCGTTTGGTGGATGTCGACTGTaaatgctgtttgttttttgtttttgaatcaACTGAAATGTCTCTCAGTCACTTTAGATAGTCGTCACAGAACTGGATGTAGGGTTGTAAAATGTCATTCACTCGCTAGAAATGGCCTCGCTGTGTTCTAGACAGGTTACGTTTTGATGGATGTTGACCACGACGGCTGTATTTCCTGCCAGAAATGCATTAATTTCTACAGAATAGGCAGTCAGCATTGTTTTAACTCCTGTTTATAGCTGAAGATCTGTACACGAGCAGGGCAGGaagtttatttttctctctgaaGTACTCCTGGGTCTGTCAGGGAAAATTGGCAGAGCTCAAGCCAAAGCCGGGGGATAAGTGTATGGAAAAACCTCTCAGCATTTCCAAAATGCTTCAACATTtgctgggtgttttttttttttttttttccttcttccctctttctctatTCAAAGTTTCCaaagggatgttttttttttttagctaaatGCTGCCACCTCTCTTCTCCAAAATGTAATTGTCTTCAGAGTGTGAATCATTCCCAAACCACACGCGTACTAGTGTACTAGAAAAGTGCCCTTTGTTGAGAGTATATTTTTGTAGTTCATATCAATTCAGAAAAGTGGAATCTGCACAGTGGCAGTCCCATGCAAGACCAGCATTTAgattttgaatgtatttttatacaATCCTTCTCAGAAGTTTTAGAAAAGAGGCCATTGACTGTTCTGAAAGGTTTTATACAACCGCCGATTgttcaccaccaccagcagttATGACTGTTCTATCACCATTAAGTaggtgtgtgtactgtatgtgtacataCTGTGTTTTATTTACCATCTGTTAAGTACAATATCCAGATTTAACAGGATTTCTGGAGTATATGCAGATTGTGATATTTATCTCCATACTGGAGAaaattgtacaaaaaaaaaggtattctCCACCTCAACCAAGTTCCCTCTGACTTATCTTTCAGAGGGGAATTCAAAGCACAGTTCATATTGTTTCTTCTTCATTGTCAGACGTTGTGACACATTTTTGGTTACTACtccatggatgtgtgtgtgtgtgtgagaatttaTGGAAGTTATACTATGCAAATGGttacctcatttttttttttctagagaAAATTACCTCAATAAATGagaatattttttcatttttctacaAAAGA

Function

symbol description
usp44 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP44 (ubiquitin specific peptidase 44).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 44

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49

RNA

RNA id representative length rna type GC content exon number start site end site
TU306994 False 617 lncRNA 0.37 1 7269107 7269723
TU306995 False 570 lncRNA 0.42 1 7269854 7270423
XM_039791598.1 True 4115 mRNA 0.50 6 7269037 7278324

Neighbor

gene id symbol gene type direction distance location
LOC120553227 fgd6,LOC103356634 coding downstream 28594 7217800 ~ 7240443 (-)
ndufa12 ndufa12 coding downstream 52628 7213396 ~ 7216409 (-)
tmcc3 tmcc3 coding downstream 60838 7163006 ~ 7208199 (-)
eri1 eri1,LOC103356631,LOC102785739 coding downstream 108250 7153800 ~ 7160787 (-)
c23h12orf56 NA coding downstream 220944 7031212 ~ 7048093 (-)
ntn4 ntn4,LOC106905329 coding upstream 7706 7286030 ~ 7313684 (-)
LOC120553517 tspan9,LOC102782866,LOC104937388 coding upstream 54819 7333143 ~ 7346150 (-)
LOC120553516 LOC104945713,LOC102782577,LOC102292091 coding upstream 68348 7346672 ~ 7362528 (-)
itfg2 itfg2 coding upstream 131759 7410083 ~ 7420477 (-)
nup37 nup37 coding upstream 300411 7578735 ~ 7611248 (-)
G226273 NA non-coding downstream 161830 7101938 ~ 7107207 (-)
LOC120553544 NA non-coding downstream 161838 7105737 ~ 7107199 (-)
LOC120553545 NA non-coding downstream 163335 7102512 ~ 7105702 (-)
G226259 NA non-coding downstream 196040 7064625 ~ 7072997 (-)
G226244 NA non-coding downstream 240079 7028748 ~ 7028958 (-)
G226384 snrpf,LOC107558408,LOC107738052 non-coding upstream 41206 7319530 ~ 7321195 (-)
G226417 pah non-coding upstream 231590 7509914 ~ 7512464 (-)
LOC120553157 NA non-coding upstream 247609 7525933 ~ 7556767 (-)
G226654 NA non-coding upstream 1070793 8349117 ~ 8357438 (-)
G226655 NA non-coding upstream 1071378 8349702 ~ 8351174 (-)
meig1 meig1 other downstream 179869 7086944 ~ 7089168 (-)
tmem243b tmem243 other downstream 182715 7073893 ~ 7086322 (-)
G226200 gns other downstream 538255 6730307 ~ 6730782 (-)
LOC120553807 LOC104934913 other downstream 2005985 5242890 ~ 5263052 (-)
cpm cpm,LOC106925010 other downstream 2486278 4756921 ~ 4782759 (-)
LOC120553151 LOC107386793,LOC104950937 other upstream 143841 7422165 ~ 7494307 (-)
G226495 LOC103356655,LOC105934024 other upstream 610247 7888571 ~ 7891311 (-)
ppfia2 ppfia2 other upstream 1286918 8565242 ~ 8793910 (-)
dram1 dram1 other upstream 1531069 8809393 ~ 8814440 (-)
G227082 anks1b other upstream 3235170 10513494 ~ 10522962 (-)

Expression


Co-expression Network