Gene
RNA
| Item | Value |
|---|---|
| gene id | snrpf |
| gene name | snrpf,LOC106576293 |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 7318517 ~ 7321189 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| snrpf | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and catalytic step 2 spliceosome. Orthologous to human SNRPF (small nuclear ribonucleoprotein polypeptide F). |
| description |
|---|
| small nuclear ribonucleoprotein F |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0019013 | viral nucleocapsid | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K11098 | SNRPF, SMF; small nuclear ribonucleoprotein F |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU307013 | False | 470 | TUCP | 0.46 | 4 | 7318540 | 7321049 |
| XM_039791101.1 | True | 633 | mRNA | 0.41 | 4 | 7318517 | 7321189 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| metap2a | metap2,LOC104945620,LOC102784010,LOC102294382 | coding | upstream | 51067 | 7257270 ~ 7267450 (+) |
| vezt | vezt | coding | upstream | 62632 | 7240852 ~ 7255885 (+) |
| trnaw-cca_35 | NA | coding | upstream | 171177 | 7147269 ~ 7147340 (+) |
| lamb1b | lamb1,LOC103364103 | coding | upstream | 174512 | 7115962 ~ 7144005 (+) |
| dclre1c | dclre1c,LOC106595997 | coding | upstream | 218513 | 7089340 ~ 7100004 (+) |
| pah | pah | coding | downstream | 188775 | 7509964 ~ 7524419 (+) |
| LOC120553155 | pah | coding | downstream | 225239 | 7546428 ~ 7562205 (+) |
| LOC120553589 | parpbp,LOC102779589 | coding | downstream | 271690 | 7592879 ~ 7605838 (+) |
| LOC120553463 | LOC103356656 | coding | downstream | 548572 | 7869761 ~ 7887525 (+) |
| tnnt2c | LOC102777397 | coding | downstream | 574356 | 7895545 ~ 7897483 (+) |
| G226319 | usp44 | non-coding | upstream | 46201 | 7272077 ~ 7272316 (+) |
| G226318 | NA | non-coding | upstream | 46810 | 7271317 ~ 7271707 (+) |
| G226317 | NA | non-coding | upstream | 47764 | 7269104 ~ 7270753 (+) |
| G226316 | NA | non-coding | upstream | 49759 | 7267509 ~ 7268758 (+) |
| G226306 | ndufa12 | non-coding | upstream | 102131 | 7213392 ~ 7216386 (+) |
| G226352 | NA | non-coding | downstream | 13865 | 7335054 ~ 7346162 (+) |
| G226452 | igf1 | non-coding | downstream | 294999 | 7616188 ~ 7707570 (+) |
| LOC120553625 | NA | non-coding | downstream | 570220 | 7891409 ~ 7955485 (+) |
| G226505 | NA | non-coding | downstream | 703172 | 8024361 ~ 8028661 (+) |
| G226507 | syt1,LOC106518246,LOC100695586 | non-coding | downstream | 726590 | 8047779 ~ 8057617 (+) |
| prkcq | prkcq,LOC102789446 | other | upstream | 631878 | 6660520 ~ 6686639 (+) |
| abcc9 | abcc9,LOC107387088 | other | upstream | 1944880 | 5281258 ~ 5373637 (+) |
| G225894 | NA | other | upstream | 2660548 | 4657444 ~ 4657969 (+) |
| LOC120553793 | NA | other | upstream | 3379563 | 3935674 ~ 3938954 (+) |
| LOC120553144 | rap1b,LOC101070080,LOC100707998,LOC103368175,LOC102210937 | other | upstream | 3477343 | 3814481 ~ 3841174 (+) |
| amdhd1 | amdhd1 | other | downstream | 1881 | 7323070 ~ 7332259 (+) |
| klhl42 | klhl42 | other | downstream | 42136 | 7363325 ~ 7368216 (+) |
| nrip2 | LOC102781986,LOC100711207,LOC102191975 | other | downstream | 49253 | 7370442 ~ 7400399 (+) |
| ascl1a | ascl1 | other | downstream | 102429 | 7423618 ~ 7426254 (+) |
| LOC120553154 | LOC104945813,LOC103356648 | other | downstream | 204703 | 7525892 ~ 7532077 (+) |
