klhl42 (klhl42)


Basic Information

Item Value
gene id klhl42
gene name klhl42
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7363325 ~ 7368216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU307033
TTACCATCTAGATGGTTGGAAGAGTCTTAGGATTCTGGAAATATCAACAGAACAGCGGTAAGTGTTGTTTAACAATCCCTCTGGGTTTTTCAAACATCGTCGAGTAATTATTTATATAACGGATGGTTACCACTGTCGGATGAAATGCTAATACATGAGAGGCACACAAACTGGGTCCACATAACATCATGCTTTTAAATCTATAGGCCACAATATTCCCAATGTTTACACTCCCAATATGGCATTGGCGTACATGTTTATCCATAATTCACTACAAACCTTAAGATGTCTTGGAAACAAAACTCATTTCTTGTCCTCATGAACTGTACATAGCAGATAATCATGAAATATGGCTTTGGTTTTACACTGCCAGTTTTATGGGAATTAAAGGTTCCTTGAAAGTTATTGTTTGGGATCAGAGAGTGCTTAATGTGTTGTATGTACACTTGTCTTATTTTCCAGAGATAAACTAAGTGAAGCTTAAAGCGCAATTCCATGAAATGAACGATGCACATGTGCCTTCTGCAACCTCCAGTTGATGGAACTTAatacaaaaaaagcacaaaatgcAAGACTTTGTTACATTACCAGCAACTGACCAAAAgtggtgtttgtttttctctctgctaAAGCAGATTTTGTTTTCACTGATCAAATATTGGAGGTGTGCAGACACGAGAAATAAGCTTCGAAGCAAAACTTTTTTCTGAAATGCTGTTTTGGGTAAATGCAGCACTTTTGATGTTTGATTTGGTGGATTTCAGATTCTCTCTGCATTACATTATTGTTTGCC
>XM_039792444.1
ACATCGACACCGGTGAAGCTGTTGAGTAAACTCGTAGCACATGAATATTTTATCTCAAGCtctatgcttttattttgaaggcaccACCCACCGCCTGTCACAGCCTGTAGAATTATTGGTCTTTTCACTACTCTCTCAGCTAAACCCTTTCAGACAGTGACGCCACGAGTGTGATAAGACACACTTTatcttgattgacagctggaTATAGACAACTGGGAGCAGGCCTGCTGGCTGCTGAGCTTATTATAACTCTGCACTGACAAATAAGTAGGAGCTTTGAGAATAACACTTCAATTGTGCAATACAATGTAGTTTAGGTTAAAAAGTCCACGTTCAGATTTATTACAAATGTGTTGAtctgataaaaaaacataatttaatctATAACTAATCTATCTACTTTACACAAggacaaaatggaaaacaaagtaaatggaaAGAGTCGAGGTGACAGCAGCAAACAACAGCTCTGCAGAAATATCCTCACGAAGAAGAAGTATGAAAACCGGATGTGACGTATAGTGCagaatcaaaacagttaacatTTGACAGCTCGGCACTGTCCCGCTAAAGGCTTATAAAATGCAATGGGAAAGGTTACTGCCAATGTTAGAAATAAACTACACTATTTAGATACTGGAGCGAGTTTTTACCGGACTGTCGAGGAATGCTAATGCGAGGAAAAGGTACTTTGGGCTAgttttagcagcagcagcagcagcagcagcatctctCTATGTAACTACCTGGTAAGCTTCCACGGCTAACGAAAATTGCTCCATGGCTATCTATGGGCTGAACATTACCATATATAGACCGGCCACAGAACTCCCTCGCCGGTGAAATGTAAACGGTGACTCCCGGAGGAGGCTGACAAAGGGCGAGCAAAGACAAAACTCAGCCTGGAAGATAAAAACACGCTTCGCCATGTCATCTGAGCAGATTATTGCCATCGTCATGGATGACAAAATCTACGAGGTGAATAAAAAGAAGCTGATAGAGAAGAGCGACTACTTCCGTGCACTGTACAGCTCCGGGATGAGGGAGTCCACCGAGGACTCGGTGCAGCTGCAGGGGCTCAGTGTCCCCGGGCTGGAGCTGGTCCTGGAGTTCATCAACACCTCCAAGGTTCAGGTTGTCAACGAGACTCTGGAGGACCTGATTGAGACCGCCTCCTTCTTACAGGTCACCTCCATCCTCAAGCTCCTCACCTCGGAGATCCGGCTGGACAACTGCGTGGAGCTGTACAGCCTCTCTGAAGTTTACGGGACTCATGATCTGCGTAATGCTTGCCTCAAATACATGAGCTGCTACTATCACCCCATGCTTAGGCGGCCAGAGTTCAGCAGCctcccctctgctgtcagagtCCAAGTCAGGGAGATGCGCATGAAAGGCACCGCCACCTTGGTAGCCATCGGAGACTTCACCTGTCTCTCCCTGGACGTGCCCGATCAGGATGAACCCTGGTCCATGCTGAGGTATGGAGAGGTGGAGCAGCGCTGGAAACCGCTCGCAAACAACCTGCCTCCAGATATGATCAACGTCAGAGGATATGGCTCAGCTGTCCTCGATAACTACCTGTTCATAGTCGGTGGATACAGGATGACGAGTCAGGAGATCTCTGCGGTGCACTGCTACAATCCCTGTAGGAACGAGTGGAACCAGGTGGCTCCACTCAACCAAAAGAGGTCCAACTTCAAACTTTTGTCAGTACAAGGGAAGATGTACGCTGTAGGGGGCCAGAGTCTGGGCACAGTGGAGTGTTACAGCCCAGAACAGGACTGGTGGACCTGTGTGTCCTCGATGCCAAACCCACTGGCTGAGTTCTCTGCATGTGAATGCCAAGGGATGATCTACGTTATGGGTGGATACACTGCAAGAGacAGGAACACAAGTGTTCTCCGTTACTGCCCCACCTCTGACACCTGGACGGTGTTTCGGTCCTGTCCGGCGCACATCCGCAAGCAGCAGATGCTGTCGGTGGAGGACACAATCTACCTGGTGGGTGGCTACACCCACGAGCTGGAGGTGGGCCAGCGGCAGCGGCGTCCCAGTCAGACGGAGGACGTGCTGACGGTGCAATCCTACAACGTCTCCACGGGGGAGTGGATCCAGCTGAAGGAGAACACGTCCAAGTCTGGCCTGAACCTGACGTGCACGCTGCACAACGATGGCATCTACATCATGAGCAGGGACGTCAGCCTACCCACCAGCCTGGAGCACCGCGTCTTTCTCAAGTACAACATCTTCTCTGATGCCTGGGAGGCGTTCAGACGCTTCCCAGCTCTGGGACAGAACATGCTGCTCTGTTCGCTTTACCTACCCAACGTGCTGTGATTGGGAGGGCTGATGGGAAAGACTAACAGAAGTGGAGACCATGCCAGTGTGTGGCTTGATTGTTCTGGCACAGAATGGGGCTCTGTGGCATTAGTGGAAACTGTATCCGGTTGCCAGGTTGAACACCTCGTGACCTTtgtgcctaaaaaaaaaaccaacctgCACTACATTGTACATACTGCTGCGGAtgcaaatacaaaagctacaatgacaaataaagtgATGAAGCGCTATGGCCCGTAGATCAACAGCATCATAACAGCTTGCCCCAGTTTGTACCTCTCATGTATTAACATTAGTCACAGTGAACATCATCTGTTTTTTCTGAGAAATAATTCCCTGGAAAGTTTAAAAAGCCCAGAAGGACATTAAACAACACTTACTGCTGCTCCTAAGATATTTCCAGGATCTCTAAGACTGTCTTAACCACCTCGATGAGAAAATATGTTGTCTGCTGCACaattaaaaagattttaaaactGTTTCCCAACTTGCGACTTGTTTTCTATCCAGGTGACTCGCCGGTTGCCGTCATTGTTTGGATTGGGAAACAGATTTCCAACTTGGGAAACTGgctaagatgttttttttttttattgtgcagcAGACAGAATATTTTACCATCTAGATGGTTGGAAGAGTCTTAGGATTCTGGAAATATCAACAGAACAGCGGTAAGTGTTGTTTAACAATCCCTCTGGGTTTTTCAAACATCGTCGAGTAATTATTTATATAACGGATGGTTACCACTGTCGGATGAAATGCTAATACATGAGAGGCACACAAACTGGGTCCACATAACATCATGCTTTTAAATCTATAGGCCACAATATTCCCAATGTTTACACTCCCAATATGGCATTGGCGTACATGTTTATCCATAATTCACTACAAACCTTAAGATGTCTTGGAAACAAAACTCATTTCTTGTCCTCATGAACTGTACATAGCAGATAATCATGAAATATGGCTTTGGTTTTACACTGCCAGTTTTATGGGAATTAAAGGTTCCTTGAAAGTTATTGTTTGGGATCAGAGAGTGCTTAATGTGTTGTATGTACACTTGTCTTATTTTCCAGAGATAAACTAAGTGAAGCTTAAAGCGCAATTCCATGAAATGAACGATGCACATGTGCCTTCTGCAACCTCCAGTTGATGGAACTTAatacaaaaaaagcacaaaatgcAAGACTTTGTTACATTACCAGCAACTGACCAAAAgtggtgtttgtttttctctctgctaAAGCAGATTTTGTTTTCACTGATCAAATATTGGAGGTGTGCAGACACGAGAAATAAGCTTCGAAGCAAAACTTTTTTCTGAAATGCTGTTTTGGGTAAATGCAGCACTTTTGATGTTTGATTTGGTGGATTTCAGATTCTCTCTGCATTACATTATTGTTTGCCAGTTTTGGGAATTTAGGTCATGATGAATAAAGACGAAGTTCAGGGGTC

Function

symbol description
klhl42 Acts upstream of or within endocrine pancreas development; glucose homeostasis; and pancreas regeneration. Orthologous to human KLHL42 (kelch like family member 42).

NR:

description
kelch-like protein 42, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307033 False 793 lncRNA 0.37 1 7367376 7368168
XM_039792444.1 True 3801 mRNA 0.46 4 7363325 7368216

Neighbor

gene id symbol gene type direction distance location
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 95875 7257270 ~ 7267450 (+)
vezt vezt coding upstream 107440 7240852 ~ 7255885 (+)
trnaw-cca_35 NA coding upstream 215985 7147269 ~ 7147340 (+)
lamb1b lamb1,LOC103364103 coding upstream 219320 7115962 ~ 7144005 (+)
dclre1c dclre1c,LOC106595997 coding upstream 263321 7089340 ~ 7100004 (+)
pah pah coding downstream 141748 7509964 ~ 7524419 (+)
LOC120553155 pah coding downstream 178212 7546428 ~ 7562205 (+)
LOC120553589 parpbp,LOC102779589 coding downstream 224663 7592879 ~ 7605838 (+)
LOC120553463 LOC103356656 coding downstream 501545 7869761 ~ 7887525 (+)
tnnt2c LOC102777397 coding downstream 527329 7895545 ~ 7897483 (+)
G226352 NA non-coding upstream 17163 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 91009 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 91618 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 92572 7269104 ~ 7270753 (+)
G226316 NA non-coding upstream 94567 7267509 ~ 7268758 (+)
G226452 igf1 non-coding downstream 247972 7616188 ~ 7707570 (+)
LOC120553625 NA non-coding downstream 523193 7891409 ~ 7955485 (+)
G226505 NA non-coding downstream 656145 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 679563 8047779 ~ 8057617 (+)
G226515 NA non-coding downstream 892117 8260333 ~ 8306828 (+)
amdhd1 amdhd1 other upstream 31066 7323070 ~ 7332259 (+)
snrpf snrpf,LOC106576293 other upstream 42136 7318517 ~ 7321189 (+)
prkcq prkcq,LOC102789446 other upstream 676686 6660520 ~ 6686639 (+)
abcc9 abcc9,LOC107387088 other upstream 1989688 5281258 ~ 5373637 (+)
G225894 NA other upstream 2705356 4657444 ~ 4657969 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other downstream 2226 7370442 ~ 7400399 (+)
ascl1a ascl1 other downstream 55402 7423618 ~ 7426254 (+)
LOC120553154 LOC104945813,LOC103356648 other downstream 157676 7525892 ~ 7532077 (+)
LOC120553156 LOC104945813 other downstream 198439 7566655 ~ 7569303 (+)
rps16 rps16,LOC103382554 other downstream 1058419 8426635 ~ 8432697 (+)

Expression


Co-expression Network