ascl1a (ascl1)


Basic Information

Item Value
gene id ascl1a
gene name ascl1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7423618 ~ 7426254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU307039
CGCCCTGCAGCAGCTACTGGACGAGCATGACGCCGTGAGCGCGGCGTTTCAGTCCGGCGTCCTGTCGCCTACCATGTCGCAGGGATACTCCGCTGACATGAACTCCATGGCGGGTTCACCGGTGTCCTCGTACTCCTCCGACGAGGGCTCCTACGATCCTCTCAGTCCAGAGGAGCAGGAACTGCTAGACTTCACCAACTGGTTCTGAGCAATCCATAGAAGAAATATGGATCAACTCACTTTCCTGTTGGAGTACGCGTGCCTGGGATGGTCCCGGAGGCGGCTGGGTGTCCTCAAGAACAAGACGCACTGTCCTTAAAACGCCCGGTCCTCCGAGACTGACAGAAAGACAGCCACGGCCTTAACGTCCCAAAAATTTGGGCAAAATCCGGCCGGAGATCAGCGCCAAAGGATTAAAGGAAGACGGGTCTCCTGACAGCGTGGGAATCCAAGCTTCTTTGCGTTTGCCCatgataaacaaaacaaaaaaaaccctaaACTGAATTCATGCTCTTCAgcagcacattaaaaacattatttaatacGTTGCTCTTCAACTATGCTAAATCCAATCACAGAACACCAACCCTTTGGTAAACCTCTCAGACGTTTTAATTCAGAAAATGCTTCCAAGTCGAGGATTTATACTATAAAATTCTATATCAAACGCTTTTTTGAAATATATTAAGATATTTTTGTATGTAAGAGATTTATAGATGTTTTGTACACATccttttgtatatattttgtctatATATTGCGAAGTTGCTTCTATACCTCCTGCCTATGTAGACGTGTAGTCTATTATTCTCTGGCTCTTCTGTTCATGAGGTTTCCAGGAGTTTGACACTCCGACGTTTTATTCTAGCACCAACGTGTCTTATTTAATAGCAAAACCATGTTATTGCATTATGTCATGAAATTCACAATGATCAAAACGTATGCAGCTATTGTCCAAACAGAGCGCAATGGCCATGCATTGTCTCTTTATACTGCCA
>XM_039791252.1
CTCCAGCATCAATCCGGATGGTTCGCAGCGAGGAATGGACTTCACAGCCAAGATGGAAATTAGCGTCAGCCAGCAGCATCTCATGCCGCCCGCTTGTTTCTTTTCCGCCGCGGCGGCGCAGAGCATCCAGCTGAGCCCCAGCGGCAGCAGTCAGGGCAGCGGGAAGTCGGTGTCCAAGCAGCCCAAGAGGCAGCGGTCTTCCTCTCCCGAGCTGCTCCGGTGCAAGCGGAGACTGAATTTCGCGGGTTTCGGCTACAGTCTTCCGCCGCAGCAGCCGCACGCAGTGGCGCGGAGAAACGAAAGGGAGCGCAACCGGGTGAAGCTGGTCAACAACGGCTTCGCCACTCTGCGGGAGCACGTCCCCAACGGCGCCGCCAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCGGCCGTGGAGTACATCCGCGCCCTGCAGCAGCTACTGGACGAGCATGACGCCGTGAGCGCGGCGTTTCAGTCCGGCGTCCTGTCGCCTACCATGTCGCAGGGATACTCCGCTGACATGAACTCCATGGCGGGTTCACCGGTGTCCTCGTACTCCTCCGACGAGGGCTCCTACGATCCTCTCAGTCCAGAGGAGCAGGAACTGCTAGACTTCACCAACTGGTTCTGAGCAATCCATAGAAGAAATATGGATCAACTCACTTTCCTGTTGGAGTACGCGTGCCTGGGATGGTCCCGGAGGCGGCTGGGTGTCCTCAAGAACAAGACGCACTGTCCTTAAAACGCCCGGTCCTCCGAGACTGACAGAAAGACAGCCACGGCCTTAACGTCCCAAAAATTTGGGCAAAATCCGGCCGGAGATCAGCGCCAAAGGATTAAAGGAAGACGGGTCTCCTGACAGCGTGGGAATCCAAGCTTCTTTGCGTTTGCCCatgataaacaaaacaaaaaaaaccctaaACTGAATTCATGCTCTTCAgcagcacattaaaaacattatttaatacGTTGCTCTTCAACTATGCTAAATCCAATCACAGAACACCAACCCTTTGGTAAACCTCTCAGACGTTTTAATTCAGAAAATGCTTCCAAGTCGAGGATTTATACTATAAAATTCTATATCAAACGCTTTTTTGAAATATATTAAGATATTTTTGTATGTAAGAGATTTATAGATGTTTTGTACACATccttttgtatatattttgtctatATATTGCGAAGTTGCTTCTATACCTCCTGCCTATGTAGACGTGTAGTCTATTATTCTCTGGCTCTTCTGTTCATGAGGTTTCCAGGAGTTTGACACTCCGACGTTTTATTCTAGCACCAACGTGTCTTATTTAATAGCAAAACCATGTTATTGCATTATGTCATGAAATTCACAATGATCAAAACGTATGCAGCTATTGTCCAAACAGAGCGCAATGGCCATGCATTGTCTCTTTATACTGCCAGCTCTATATTAcagatgttgaaaaaagaagTCTTATAACCATATTTTCTACACTAGTCCAAGAATAAAATGATTTGGTACTGAA

Function

symbol description
ascl1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including neuron differentiation; regulation of transcription by RNA polymerase II; and response to retinoic acid. Located in nucleus. Implicated in congenital central hypoventilation syndrome.

NR:

description
PREDICTED: achaete-scute homolog 1a

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0061195 taste bud formation biological_process
GO:0002070 epithelial cell maturation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021984 adenohypophysis development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU307039 False 998 lncRNA 0.45 2 7425057 7426170
XM_039791252.1 True 1511 mRNA 0.49 3 7423618 7426254

Neighbor

gene id symbol gene type direction distance location
metap2a metap2,LOC104945620,LOC102784010,LOC102294382 coding upstream 156168 7257270 ~ 7267450 (+)
vezt vezt coding upstream 167733 7240852 ~ 7255885 (+)
trnaw-cca_35 NA coding upstream 276278 7147269 ~ 7147340 (+)
lamb1b lamb1,LOC103364103 coding upstream 279613 7115962 ~ 7144005 (+)
dclre1c dclre1c,LOC106595997 coding upstream 323614 7089340 ~ 7100004 (+)
pah pah coding downstream 83710 7509964 ~ 7524419 (+)
LOC120553155 pah coding downstream 120174 7546428 ~ 7562205 (+)
LOC120553589 parpbp,LOC102779589 coding downstream 166625 7592879 ~ 7605838 (+)
LOC120553463 LOC103356656 coding downstream 443507 7869761 ~ 7887525 (+)
tnnt2c LOC102777397 coding downstream 469291 7895545 ~ 7897483 (+)
G226352 NA non-coding upstream 77456 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 151302 7272077 ~ 7272316 (+)
G226318 NA non-coding upstream 151911 7271317 ~ 7271707 (+)
G226317 NA non-coding upstream 152865 7269104 ~ 7270753 (+)
G226316 NA non-coding upstream 154860 7267509 ~ 7268758 (+)
G226452 igf1 non-coding downstream 189934 7616188 ~ 7707570 (+)
LOC120553625 NA non-coding downstream 465155 7891409 ~ 7955485 (+)
G226505 NA non-coding downstream 598107 8024361 ~ 8028661 (+)
G226507 syt1,LOC106518246,LOC100695586 non-coding downstream 621525 8047779 ~ 8057617 (+)
G226515 NA non-coding downstream 834079 8260333 ~ 8306828 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 23219 7370442 ~ 7400399 (+)
klhl42 klhl42 other upstream 55402 7363325 ~ 7368216 (+)
amdhd1 amdhd1 other upstream 91359 7323070 ~ 7332259 (+)
snrpf snrpf,LOC106576293 other upstream 102429 7318517 ~ 7321189 (+)
prkcq prkcq,LOC102789446 other upstream 736979 6660520 ~ 6686639 (+)
LOC120553154 LOC104945813,LOC103356648 other downstream 99638 7525892 ~ 7532077 (+)
LOC120553156 LOC104945813 other downstream 140401 7566655 ~ 7569303 (+)
rps16 rps16,LOC103382554 other downstream 1000381 8426635 ~ 8432697 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 1708340 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 1810972 9237226 ~ 9241349 (+)

Expression


Co-expression Network