G226507 (syt1,LOC106518246,LOC100695586)


Basic Information

Item Value
gene id G226507
gene name syt1,LOC106518246,LOC100695586
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8047779 ~ 8057617 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU307208
ACCTTGAAAGTGAACTGCTCATTGAAGACAGGATTCAGGGTCTTCCTGTGGACCTTGGTctcaaacttcttcttcttgtccGGCAGCAGGTAGACCTTTACGTATGGGTCAGATGTGCCACCCATGTCCATAGCAGGCAGCTCTGCGGCCTGGATGATCCCCACCATGAGCGTATTCTCGGTGAAATTGTAATCCAGGGAGTATTGTAATTTGCCCAGTTTCTGGTCCTCCTTGGGCTCTGCCTCTTGCTCCGTTTCAGTCAGCCCTGTCTCCGCATCCTCCTCATCCTTCAAGGCCTGAAGGAAACACCCACCAAGAGTCAGTGTCGCCAGTTTCTCGTTGGTGCTAGCACCCAGCCAGCCGTTCCCCGCCCAGGTCCTGCCAGTGGACCTACTCCTGTAAAAGCTGCCACTTGTTTTATGGTGTATAAGGGGGAAAACAGGGGGGGGAGCAAGCACTAAAACACAATAGCAGTTAACACCAGGACATGCTTTGTGATGCACTAAAGCCCCGGGCCTGGTCCCCTGATGATGCTTTTCTATCAATCTCTGGTTGTTTCTGTCTAAAGGGAGGAAAGATCAAATGATGTCGCCAGAGATGTGAGCGATGGGCAGGCATTAGAGGGGGAGAAGAAGGGGGAGGAGGGtagagagaggacagaaagaaggagagagaagatgCTTCCGGAAAAGATTACTGTAAGACAATTCCCTTGATGTTATTTCAGGCAGATCAAGTCTCTGGCAAAAACACATATCAACTGGGAAGAGTCTGAAGTGGCAGAGAGTGAGAAGTGAAGTTGCCTTTTTCGCTAGCCTGGCACTGAGGTAAGGGTAGCAGGTGGTGGCATTGGTGGTGGGTAGAGGAAGGGTGGTGGGGTGGAGGAGTTTGTTATAAGACCAACATGCGATTGAAGAGGCAAAGACTAGCTCTCAGGGTCATTCATTCAGCGTCAAAAGTTGCCTTCCAAGTTATCTCTTTCGTTAGGCATGCAGAGCATTCTCTGTCGTACAAACCAGTGCTCTCGTGATTACGCCCTCAAGACATACAGTCACATTGTCAACATAACCCCTAAAGCTTTTATGCTATCCCCTACGTCGATGGTAGCTAGAAGCATCATGCCAGCAGTGGGTGGGTAGGTGTTGGTAAAAAGGGTTGTAATGTACATCGGGGCCTGCTCCTATTAGTTTGTCAAGTTGCTCATGTGGAAGCAAAAGGCTGAACAACACTGACTGGTTTTCAAATGTTCCGCTGAGCCACTTTGGTCTCTGCCTTGTGGGAGCAAATTCGAATTGAGTGGTTTTTAGAGAGAAAAGTGGAGTAGGTTAAAATGATTgaagaaatattttattaaacatGTAATTTATATGATTTTATAAGGTTAATCCAATGTCCCCACATCTGTGTTCCAGGAAAGGTACGATCTGTTTCACCTGGCTTGACAGATGTGAATGCTACTGTAAGTCAAAAGCTTCCTTTTCATTACCAATCAATCCACGTTTGCTCGCTGCCACTCGTTTGAAATGTAAATTAAAGATTCAAAAGGCAGGAGACTTCAGCTCGGCACAAAAAAATCAGCATCGTTCAACCTTGTCAATGCGCACCCAGTGTTTCtttcatacatatatatgtgcaTATGCAAGttgtacacacatatatacagcagatatacatgtactgtatgcgtAGTTACATATATTTGGGAGTAAGTTGTCAAgaggctataaaaaaaaaaaacacatcagagCAGCAGGCTTAAGAAGATCCAACAGCAATTGGGAACCTACCGCCAGTGACCATCCCGAACAGTCATCAGACACAACACAGATAAGGAGGACATAGAAggaagaaacacaaattaaaacaaccacacacaggaATTAACACACCAGAGTCTGGGCACACCAGGAGAAATGACCGCTTGCCTCGGAAGTGGCAGATTCACCGATCTGAGAGATTAGTTATTAGGGCAACCAATAACAGGTCGTTTATTTTGATTAATGgctatttgaaaataaaaattagaTGTTCTAAGGCAGCCAGAGTATTTGAAATTAATGGAAAATCTTCTCCTTTAAAAAGCACAAGTGATGTGCTGTGCTGCAGGTATTTGACTGACCTTGCTGGTTGGTAACGCTGTTCTCTGTTACATGAGAAAATAAACTAACTAAAAGTCTAAAAGGCATTTGAATCTTAATTTATGCTTTCTTTTACAGTAAGTAATGAAGTATGAAAACAGTGTCAGTGGTTTCTGTATTTGATTCGATTCGGATCTATGTCTGATGGCAGAGGTGTTGCAGCAAATTAAACACACTTTGTACACGATTCCACCAAGGACAGCGGTATAATGATGCTCCGCTGGTGCAATTAGTGTGCTAACTCCATTTGAAGTGTCAGGGTTTCATTGCTTCCCGTTCTGTACTGTTGAAAGGTAGAGTATAATCACATTCCCTCCCATTTGTTTTATCGTTTGGTGATGTCATTTCTCTGGGTGGATACCACTTTATTACACGGCAAACCTTACTCACACTCTTTAACATGTAAGCGGGTCCTTAtaagacaaaaagaaacacaGGAACAGGAACaaaaagtaggagaaaaaagagCGATTGAAATACTCTTCAATCTGAAGCCATTTAAATGACTTCCATTAACTCTCCTGTAAtaagactgaaatatttttttaattaagtggTAAAATATCATCCTAggtaatactgtatgtatttctttGGCAATGATTAAT
>TU307210
GCCAAATTCATATACTCTAGACTGGACACAATGCAAGAGGCTTGCTCTTGACCTGCGAAAAGAGCAATGAATGTGGTAATGATGTTGAAAGTGGGAATGACATTATAATTCTCTTCCTGCTGTGCTGAGGGGGCTCTTTGTGGTTCATTTGCTGTGTATTTGTCTGATGTAGCTGCATCATCGCTCCCTGAGTGATTTGGATCTTTTACTAAATCTTTTTGTCTCATTAGTGTATAAACCCAGAGTCATCAACACCAGGGGCAGCAGCAATTTGTGGTGGttaacagacagaaacaaagcTGAGACTCTTTGCCATGAGGACCTGACATTAATCTCTGCACGTCTTTTCACACTCTTGCCTAAGTCTCTGTACACACAAACCAGTGTTTCCCCTTTTTCTTGGCAGGGTGGAACATTTACCGACAGATCTCTCAGGCCATAAAGGTAAAGTCTCTTTTACAATGCTTACGGCAGGATCTTAAATGAGGCGTGTTTTCAAATTGGTGTCAGTTTACCCAAAAGTCACATAAGttcctttcacacatgcactccAACCCTGAACTTATGTAGACATTACTCGGAGGAGTTGTATGAGGACGCAAATGTCCAAGTCAATTGAACTGGATATTAAATGGCCTTTCCCCTGCCAGCTCCCTAGTACAAAGTCTGTGTAATGTTCGATTGAGCCCAAAGTGTGAATAGAGCCGCTCACTGTCCAGAGAATTCACAGAGAACAAGTGGGCATGTTGATGACGTTTCTATCATGCGGCTGGTGCAAAACTGGAAGAATACAAACATCCGAGGGCGAAAAAAGAAGGGTTgaattacacaaaaaaaatgtgtaactggagagacaaagagatgcGGAACTTCTGTCGAAAAGGGCCTTCGCAAATGTTAGACAAATTCAAGGAATGGCAAGAGACTTggttgggtaacactttactttaagttttctacataagagtgacatgacactgtcatgacacagtcatgacacatgaaccctaaccctaaccccaaacctaaccataaccataacgtgtcatgacaaaaccgaatgacacttactaaaaaaagagttatgtcataaacgtttatgacttgtttataatgttttatgacacgttcatgacagtgtcatgtcactcttatatagaaaacttaaagtaaagtgtaacccttggttgtttatgaccaaattatgAACCGGCTACATGACCACGGACTAATCCAGAAGTTAGAAGTTAGATGCTGAATATCATTTCCCGATCATATCACCAGACGGAAGACTTATATTGGATGATCCTGCCAAACCCTACAGATGACATTAAATGACAACATTGTTGACTGTTCCCTGTAACAGTTCTACATCTAAGGTTAAGTAATCAAAACCGGTTATAGAAAGATGATAGTTAAAGGGAAAAACAGGCATTAAGTATTGGTCTGTGATGGGACATGCTACACGCCCATTTATCATCCCAACTTCACTACATAAAGGGCATACTACTTCCTGCATTGACACAGAAATGTTATGGACTAATTTTGTCACTTTGAGTGTACCTTCTCGGCAAAGATATAAACACTTTAGTCAAGGTCGGACCACACATTGAGCATTACATATCAAGCATGCTCTGGTCTTAAATCGTGCAGAGTAGAATCATCCAGTATGAACGTGATTTCCAGGGGCATTAGGTtcgaacaaaacaaaaataccatCTTCATGCTTCAACGGTGATCAGATATCATCTCTAACTGCAAATGATCCCAGTCACTGTTCTCCATAATATCGTCTCTGAATAGTGGGTCAAATGAGTCCGGGTTTTTAGGTCGGTCTGCTGGGAGCTTCGTGTAATGAGCCGCGTTACACTTTAGCTCCACTGTGGATCCTATTACCAGTGTAATCAAGAACCTCATAGAGAGACCTGTCACTGCCTCCCACTACATTAAAAGATCCCTCTGTGAAATGCTGTCCACATAATATGCCATtttcataaaatgaaaaatatttggTCGTTTTGTCTCTAAAAGAAATAAGGGCCTGGTTGACTGATGGTGTTGAGTTGTATTAGCATCATTGTTGACTCTGTGTATTGATGAATATGGCAAAGGTTAAGGGGTTACTGAAGGGGGCGCAAACCTTTGCCAGATTGTGACTTGGTGTGTATAGGAGCAGTGTTGCTGTCTAATCTCCGGCTGTCAGTTCTGTTTATAATGGGGAGTTAGCTAGCACAGTGAGGGACAGCGCATTGTTCACGCACCGTGTCTATTATCTGTCACACAACATCTGGCGCCAGGAAGCTGATGCGCTTCCTcattctgcttttttaaaactcaGCCACTGGAAAAAATAAAGCAGATGGGTATCTGCAGGGGCTGTTTTCAATCaagtagaaagaaagaaacaaattcAGAGCCGAACGAAGTCCCaatagtgtactgtatgttttcacACGGCTCAGTTGCGTATGCACAAACTCAACCACCATGATGTCCCCGTGAGATTGCTCTCAAGCTTCAGTGAGCAAACTGTGTTTACGGCAGTGGTAACGCAACAAAAGGAGAATGTTGTGCAAAACCTGGGTTGGATCCCTGGAGAGATGAAAAGATGGACCCCCCTCAGAAGTTGGGTGTGACCATACTTACGAAGGAGGACCTTTTGCAAtaacgacacacacagagagatttGGAGAACAGGCCCTTACCGTATTCTCGGTGAAATTGTAATCCAGGGAGTATTGTAATTTGCCCAGTTTCTGGTCCTCCTTGGGCTCTGCCTCTTGCTCCGTTTCAGTCAGCCCTGTCTCCGCATCCTCCTCATCCTCAGTTTTGGCTCCATCTTTGACGTCCATCATGTTGATGGCATTCTTGCCCTTGTCTTTGcccttctttttgtttttcttcttgaaTATCCATTTTTTGCAGATGCAGAAGCAGCATGCTAACACCAGAATGATAGCCACAAAGGCAATAGAGACAATGGCCCATGATGGC

Function

symbol description
syt1 Enables low-density lipoprotein particle receptor binding activity. Involved in positive regulation of dendrite extension. Located in cytoplasm.

NR:

description
PREDICTED: synaptotagmin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307208 False 2746 lncRNA 0.43 2 8047779 8057052
TU307210 True 2994 lncRNA 0.43 2 8051772 8057617

Neighbor

gene id symbol gene type direction distance location
ppfibp1a LOC103362093,LOC102299773,LOC102192229 coding upstream 34968 7978077 ~ 8012811 (+)
tnnt2c LOC102777397 coding upstream 150296 7895545 ~ 7897483 (+)
LOC120553463 LOC103356656 coding upstream 160254 7869761 ~ 7887525 (+)
LOC120553589 parpbp,LOC102779589 coding upstream 441941 7592879 ~ 7605838 (+)
LOC120553155 pah coding upstream 485574 7546428 ~ 7562205 (+)
myf6 myf6 coding downstream 404707 8462324 ~ 8464094 (+)
myf5 myf5 coding downstream 411044 8468661 ~ 8471034 (+)
acss3 acss3 coding downstream 457971 8515588 ~ 8565355 (+)
washc3 ccdc53 coding downstream 744931 8802548 ~ 8807170 (+)
gnptab gnptab coding downstream 760953 8818570 ~ 8845025 (+)
G226505 NA non-coding upstream 19118 8024361 ~ 8028661 (+)
LOC120553625 NA non-coding upstream 92294 7891409 ~ 7955485 (+)
G226452 igf1 non-coding upstream 340209 7616188 ~ 7707570 (+)
G226352 NA non-coding upstream 701617 7335054 ~ 7346162 (+)
G226319 usp44 non-coding upstream 775463 7272077 ~ 7272316 (+)
G226515 NA non-coding downstream 202716 8260333 ~ 8306828 (+)
G226554 NA non-coding downstream 284013 8341630 ~ 8408659 (+)
G226556 ppp1r12a non-coding downstream 298713 8356330 ~ 8359282 (+)
LOC120553277 NA non-coding downstream 560197 8617814 ~ 8620495 (+)
G226638 NA non-coding downstream 812401 8870018 ~ 8870711 (+)
LOC120553156 LOC104945813 other upstream 478476 7566655 ~ 7569303 (+)
LOC120553154 LOC104945813,LOC103356648 other upstream 515702 7525892 ~ 7532077 (+)
ascl1a ascl1 other upstream 621525 7423618 ~ 7426254 (+)
nrip2 LOC102781986,LOC100711207,LOC102191975 other upstream 647380 7370442 ~ 7400399 (+)
klhl42 klhl42 other upstream 679563 7363325 ~ 7368216 (+)
rps16 rps16,LOC103382554 other downstream 369018 8426635 ~ 8432697 (+)
lhfpl3 lhfpl3,LOC101483460 other downstream 1076977 9134594 ~ 9173220 (+)
ndufb2 ndufb2,LOC102790702 other downstream 1179609 9237226 ~ 9241349 (+)
G227121 kera other downstream 2639637 10697254 ~ 10699718 (+)
G227141 dcn,LOC103382665 other downstream 2674452 10732069 ~ 10737503 (+)

Expression


Co-expression Network