Gene
RNA
| Item | Value |
|---|---|
| gene id | G226556 |
| gene name | ppp1r12a |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 8356330 ~ 8359282 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| ppp1r12a | Enables protein heterodimerization activity. Acts upstream of or within several processes, including actin filament bundle organization; convergent extension involved in axis elongation; and nervous system development. Located in cytoplasm. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and myotome. Orthologous to several human genes including PPP1R12A (protein phosphatase 1 regulatory subunit 12A). |
| description |
|---|
| PREDICTED: protein phosphatase 1 regulatory subunit 12A isoform X5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU307280 | True | 521 | lncRNA | 0.58 | 4 | 8356330 | 8359282 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ppfibp1a | LOC103362093,LOC102299773,LOC102192229 | coding | upstream | 343519 | 7978077 ~ 8012811 (+) |
| tnnt2c | LOC102777397 | coding | upstream | 458847 | 7895545 ~ 7897483 (+) |
| LOC120553463 | LOC103356656 | coding | upstream | 468805 | 7869761 ~ 7887525 (+) |
| LOC120553589 | parpbp,LOC102779589 | coding | upstream | 750492 | 7592879 ~ 7605838 (+) |
| LOC120553155 | pah | coding | upstream | 794125 | 7546428 ~ 7562205 (+) |
| myf6 | myf6 | coding | downstream | 103042 | 8462324 ~ 8464094 (+) |
| myf5 | myf5 | coding | downstream | 109379 | 8468661 ~ 8471034 (+) |
| acss3 | acss3 | coding | downstream | 156306 | 8515588 ~ 8565355 (+) |
| washc3 | ccdc53 | coding | downstream | 443266 | 8802548 ~ 8807170 (+) |
| gnptab | gnptab | coding | downstream | 459288 | 8818570 ~ 8845025 (+) |
| G226515 | NA | non-coding | upstream | 49502 | 8260333 ~ 8306828 (+) |
| G226507 | syt1,LOC106518246,LOC100695586 | non-coding | upstream | 298713 | 8047779 ~ 8057617 (+) |
| G226505 | NA | non-coding | upstream | 327669 | 8024361 ~ 8028661 (+) |
| LOC120553625 | NA | non-coding | upstream | 400845 | 7891409 ~ 7955485 (+) |
| G226452 | igf1 | non-coding | upstream | 648760 | 7616188 ~ 7707570 (+) |
| LOC120553277 | NA | non-coding | downstream | 258532 | 8617814 ~ 8620495 (+) |
| G226638 | NA | non-coding | downstream | 510736 | 8870018 ~ 8870711 (+) |
| G226641 | mybpc1 | non-coding | downstream | 522535 | 8881817 ~ 8883677 (+) |
| G226720 | NA | non-coding | downstream | 575768 | 8935050 ~ 8935551 (+) |
| LOC120553611 | NA | non-coding | downstream | 582559 | 8941841 ~ 8943537 (+) |
| LOC120553156 | LOC104945813 | other | upstream | 787027 | 7566655 ~ 7569303 (+) |
| LOC120553154 | LOC104945813,LOC103356648 | other | upstream | 824253 | 7525892 ~ 7532077 (+) |
| ascl1a | ascl1 | other | upstream | 930076 | 7423618 ~ 7426254 (+) |
| nrip2 | LOC102781986,LOC100711207,LOC102191975 | other | upstream | 955931 | 7370442 ~ 7400399 (+) |
| klhl42 | klhl42 | other | upstream | 988114 | 7363325 ~ 7368216 (+) |
| rps16 | rps16,LOC103382554 | other | downstream | 67353 | 8426635 ~ 8432697 (+) |
| lhfpl3 | lhfpl3,LOC101483460 | other | downstream | 775312 | 9134594 ~ 9173220 (+) |
| ndufb2 | ndufb2,LOC102790702 | other | downstream | 877944 | 9237226 ~ 9241349 (+) |
| G227121 | kera | other | downstream | 2337972 | 10697254 ~ 10699718 (+) |
| G227141 | dcn,LOC103382665 | other | downstream | 2372787 | 10732069 ~ 10737503 (+) |
