G226711 (atp6v1e1,LOC103382684,LOC100708725,LOC103358108,LOC108233293,LOC101477634)


Basic Information

Item Value
gene id G226711
gene name atp6v1e1,LOC103382684,LOC100708725,LOC103358108,LOC108233293,LOC101477634
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8918491 ~ 8922944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU307503
CTGGGTCTTTTGCGACATTACCAAGCCGTTGGCGGGCCTCGTTTAGCATTTCCGAGATCATATCATCCCGGGCCTTCAGCACCTTCAGTCGAGCCTGGTTCATCAGGTTAGACATTTGAattttcttttgctgctcgatctgcttctctttcttctcGTAGTACTCCATTATCTTCAGCCTCTGAGTTTGGACCAGGCGGCCCTTCTCGATGTTGAACTCTTCTTCTGCCTTTGCATCAATCTCTTCTGCCTTCTCATTGGCCTCCTGCTCAATGAAGGCCATCATGTGCTTGATCTGCTTCTGAACATCGGCATCGCTGAGCgccatggttgcagctgtc

Function

symbol description
atp6v1e1 Enables ATPase binding activity. Predicted to act upstream of or within proton transmembrane transport. Located in extracellular exosome and lysosomal membrane. Part of vacuolar proton-transporting V-type ATPase, V1 domain. Implicated in autosomal recessive cutis laxa type IIC.

NR:

description
PREDICTED: V-type proton ATPase subunit E 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307503 True 341 lncRNA 0.50 5 8918491 8922944

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.14 LOC104950099 coding downstream 1950 8909406 ~ 8916541 (-)
spic spic,LOC102783824 coding downstream 14505 8901551 ~ 8903986 (-)
spi2 LOC102783444,LOC106914467 coding downstream 17493 8899475 ~ 8900998 (-)
mybpc1 mybpc1 coding downstream 21948 8862382 ~ 8896543 (-)
chpt1 chpt1 coding downstream 57132 8848028 ~ 8861359 (-)
LOC120553608 galnt8,LOC103358106 coding upstream 12713 8935657 ~ 8951488 (-)
LOC120553610 NA coding upstream 59761 8982705 ~ 8985925 (-)
tigarb NA coding upstream 109291 9032235 ~ 9036709 (-)
LOC120553659 ccnd2,LOC100707642 coding upstream 117094 9040038 ~ 9054300 (-)
usp18 NA coding upstream 151683 9074627 ~ 9083949 (-)
G226658 rps16,LOC103382554 non-coding downstream 488585 8426737 ~ 8429906 (-)
G226654 NA non-coding downstream 561053 8349117 ~ 8357438 (-)
G226655 NA non-coding downstream 567317 8349702 ~ 8351174 (-)
LOC120553157 NA non-coding downstream 1361724 7525933 ~ 7556767 (-)
G226417 pah non-coding downstream 1406027 7509914 ~ 7512464 (-)
G226787 NA non-coding upstream 46445 8969389 ~ 8969898 (-)
G226797 NA non-coding upstream 106102 9029046 ~ 9029370 (-)
G226800 NA non-coding upstream 114827 9037771 ~ 9039857 (-)
G226803 LOC103358093,LOC102788764 non-coding upstream 193866 9116810 ~ 9119971 (-)
G226917 NA non-coding upstream 819060 9742004 ~ 9742560 (-)
dram1 dram1 other downstream 104051 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 124581 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 1027180 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 1424184 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 1640167 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 1590550 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 2057254 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 2535637 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 2694411 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 2914304 11837248 ~ 11848941 (-)

Expression


Co-expression Network