G227021 (pacsin2,LOC102778832)


Basic Information

Item Value
gene id G227021
gene name pacsin2,LOC102778832
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10223494 ~ 10225897 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU307914
ttccaatAAATTCATTTATTATGTTGTGGGACAACATTTACAAACCTCACTGTCCAAGTACAGCTGTTGCACCGTTTTGACAACAGCATGCCCTGAAAATATGGCAAAACGTCACCTTTCTCACTATTATTAAAGACAAGAATATTATTCTTACTCTCGTGCTGCAGTTAAAGGCATCAAATTGCTTTTTTTCAATGATTTCCTCAATACATAGGCAATTAATGAATTTGGAGCCTGCAAAATTGAAAAGACTGCAATTCATTGCTGCAAAAAATGCAAGCTTACAAAACACTTGATGATCCAAACATATGTATTAAAGTTATGAAATCAGGTGAATCCATTCATATCATAGCTCCTAAGGGGAAATTAACAATTATGCACATATTTGTTTATTCATTCAATGAGTATGGCCCTCTGTGATGGGGGAAAATAATCATATTTacaaatatatcaaaataaCAGATTTAAGGGATATTTGCCATAAAACATTCAATTACTATACAAATTGATTCTCAGTCACAGCATTCTAACAAGAGTAGAACAAAAGCACTTGTGGCATCATAAATTAACAATCATCAATTTCCAACTACATATCATCTGATATTGATGCTTAATTTGTTCGACTACGTTTCATCCAGGCTATTTACATGCATGTATGCAAGCCATACTTGGCTGTGGTTTTATTGCTATAAATTGTAATATAcgtattttcaaaaaaaacaaaacaacaacaaacacttaCATATTCTCCCATAACTTGACATTTACCAAGTGAGAGAATTAAAACATGGAGATTCAAGTGAGATAAACGTTTGTGAAAAAAATTCAGTGTTCGAAAAATAACCCATATTGTAGGACAATCTACAATCAACAGAAAGTCGAGAGATCTGTGTGAGAAGGTTGAGGACAGTTTAAGGGGTTAATGGGTCAATACTTGCAAAAACCCAACATTAGCAAACGTGAACAATCAAGAAGTGAGGAAATACAATCAGTGAATATACATTCAATTGCAGTCACTAGAGGAACCGACTCACTGTGAACTAAATGAAGGCTACGTCAGGATAAGGGTCTAAGGAGCTTTATCATTCCTTATAAAATAACCACAACAGTTCATGAACTGAATGGAAAAACAGAACCCTGAAAAGGAATGACAGAATAATGTTAGCACTAATTTAAATCAGGTTAAATCTGACACAATAATGTCAACATAAGGGCTCGCATTGTCCAAAATAAATCTAACAATTAACATACATGGACTGGTTtctaaaaaaaaggcagaaatggTTTCAAACCTAAAATAGATTATTATAAAAAGGGTCATCTCCCTTAATTAATCCATAGTGGCTTGCATATTTAGGCTGCATGTGTCATCCCAGTGTTTTgtttaaacaatatataaattCACACATACATTTCATCCAATATATACTTGaaaggctatttttttttttgtaacagcATAAATGGGATTCTAAGTAACATATCATACACTGACAGCAATTTTTCTCCTGCGATCTTCTTCGCCAATCTGTGGAAAGCAACATTTCAAGTGGTCCTTTAGTAATCTGCAACTTCTCTTTTCCGGCCTTCTCCAACACCAGTCCAGTCTTCGCCAACAGGGAGAAAAGGGTTAAAAATATCGTTTCCAGCCGCACTGTCATTTCGCAACACACCACTTTCTTCACATTtattcatttgtaataattcatTACTGGATGTCTTCCACATAGTTAGCAGGATAGAGGCCTGTTTTTCCATCCTTGAGCCGGCCTTTGCACCAACCCTGATCATCTTCTTCACCTATTTTGGTGAACTCATCACCTGCTTTAAAGGTAAGCTCATCCTGCTCCTGGCCTTCATAGTCATAGAGGGCTTTGACAGGCACAGATATGACGGGAGAAGCCGGCTCATCTTCGAATGGATTCCCATCACCGTTGGAGGAGAAAGGGTTACCACCTGTGTCTTCATCTGACCAGTCTGGAGTCTTCTCCGTACTGCTGGCACTGGATGGACAGACAAATAGCCacttagaaaatgtattttcttgttCATCTCCGGGCCTTAGGCATCAACGGGACATTCCAGCATGCCAGGGGTAAGCAGGAACAAAAGTTCAAAGTTAGAAAAAgcgagaaaaataaatataacaccAAGTCAAGTtatgtcaacacacacaaaaagcccAAAGTGCATTTTCAAATCTGGGACAGCTTTGTGA

Function

symbol description
pacsin2 Predicted to enable phospholipid binding activity. Acts upstream of or within cilium assembly. Predicted to be located in caveola; endosome; and ruffle membrane. Predicted to be active in endosome and plasma membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hatching gland; and notochord. Orthologous to human PACSIN2 (protein kinase C and casein kinase substrate in neurons 2).

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307914 True 2218 lncRNA 0.37 3 10223494 10225897

Neighbor

gene id symbol gene type direction distance location
trnay-gua_61 NA coding downstream 27061 10196347 ~ 10196433 (-)
trnay-gua_60 NA coding downstream 27624 10195784 ~ 10195870 (-)
bik NA coding downstream 36521 10183285 ~ 10186973 (-)
si:ch73-352p4.8 LOC105937590,LOC104962836,LOC107085821,LOC102237094,LOC103140239,LOC107386545,LOC103459124 coding downstream 70340 10147639 ~ 10153154 (-)
rhno1 NA coding downstream 82788 10138942 ~ 10140706 (-)
ckap4 NA coding upstream 16775 10242672 ~ 10247265 (-)
LOC120553502 NA coding upstream 38088 10263985 ~ 10264705 (-)
apaf1 apaf1 coding upstream 338533 10564430 ~ 10623168 (-)
tcp11l2 tcp11l2,LOC102777109 coding upstream 398123 10624020 ~ 10632377 (-)
LOC120553733 NA coding upstream 408851 10634748 ~ 10635920 (-)
G227019 NA non-coding downstream 3044 10218086 ~ 10220450 (-)
G226917 NA non-coding downstream 480934 9742004 ~ 9742560 (-)
G226803 LOC103358093,LOC102788764 non-coding downstream 1103523 9116810 ~ 9119971 (-)
G226800 NA non-coding downstream 1183637 9037771 ~ 9039857 (-)
G226797 NA non-coding downstream 1194124 9029046 ~ 9029370 (-)
LOC120553506 NA non-coding upstream 283834 10509731 ~ 10537837 (-)
G227089 NA non-coding upstream 312307 10538204 ~ 10538416 (-)
G227127 NA non-coding upstream 376697 10602594 ~ 10658927 (-)
LOC120553135 NA non-coding upstream 413850 10639747 ~ 10660499 (-)
LOC120553801 NA non-coding upstream 714481 10940378 ~ 10942825 (-)
dram1 dram1 other downstream 1409054 8809393 ~ 8814440 (-)
ppfia2 ppfia2 other downstream 1429584 8565242 ~ 8793910 (-)
G226495 LOC103356655,LOC105934024 other downstream 2332183 7888571 ~ 7891311 (-)
LOC120553151 LOC107386793,LOC104950937 other downstream 2729187 7422165 ~ 7494307 (-)
usp44 usp44,LOC102783730 other downstream 2945170 7269037 ~ 7278324 (-)
G227082 anks1b other upstream 287597 10513494 ~ 10522962 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other upstream 754301 10980198 ~ 10981259 (-)
hgfa LOC103365344,LOC104958230 other upstream 1232684 11458581 ~ 11482578 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other upstream 1391458 11617355 ~ 11676832 (-)
cracr2ab LOC102301749,LOC103365394 other upstream 1611351 11837248 ~ 11848941 (-)

Expression


Co-expression Network