G227338 (iqsec3)


Basic Information

Item Value
gene id G227338
gene name iqsec3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 11990100 ~ 11992952 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU308377
GTTGAACCTGTTTTGACTGTGACTATGACTTTATTAATTTCCCCAAACCCACCATATTTAATTTTTGTATGGCAAAGGGGTACTTTTATCTAATATTAAGTTTGGTTGGGTTACCTCACATGCCCGCAGCACTTTACTCAGCAACATTCGTTCTCTCATCCACTCTTCACCCACTCCTGCTTGACGCCTCTAGCCCAACAGATATGACTAGTCCTGGGGTTTCATCCTATCTCATCCTACCTTGATCATGAGACACTGCACTGACTTACCTGTTTTTTGGGACTTGGCCCTATCACTAAGCACTTACCTCCACTGCGTTGTGTCCACTTCTGTCATCTATCTCCTGGTTTCctgatgGGGAGCCCTGTTTGCCATGCAGCTCTAGCTGTGTGCCGTTGTTCTTTACGGAGTGCGTCTTGGCTCCCTGCTGCTTTTCCAGCTCCCACTCGATGCGTATCTGCTCCATCTCTGACACCTCTGCAATTGATTCCTTCAGGTCTTCTACAAACTTGAGCAGCTCCTCAGCACTTTG

Function

symbol description
iqsec3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including actin cytoskeleton organization; activation of GTPase activity; and regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308377 True 532 lncRNA 0.47 3 11990100 11992952

Neighbor

gene id symbol gene type direction distance location
slc6a1l LOC103365402,LOC105916091 coding upstream 8972 11966470 ~ 11981128 (+)
LOC120553241 NA coding upstream 32928 11941865 ~ 11957172 (+)
tmtc2a tmtc2 coding upstream 60634 11872547 ~ 11929466 (+)
mettl25 mettl25 coding upstream 125401 11852680 ~ 11864699 (+)
LOC120553244 LOC103365396,LOC108235086,LOC101484317,LOC107085982 coding upstream 153124 11826309 ~ 11836976 (+)
atp2b1a atp2b1,LOC103370548 coding downstream 267117 12260069 ~ 12304375 (+)
mest mest coding downstream 315881 12308833 ~ 12316118 (+)
chchd3a LOC103366397 coding downstream 568398 12561350 ~ 12634881 (+)
klhdc10 klhdc10,LOC102781502 coding downstream 1084205 13077157 ~ 13082244 (+)
LOC120553267 LOC103372592,LOC104942102 coding downstream 1128560 13121512 ~ 13125815 (+)
G227267 NA non-coding upstream 362157 11624235 ~ 11627943 (+)
G227251 NA non-coding upstream 529600 11460113 ~ 11460500 (+)
G227221 NA non-coding upstream 802318 11186939 ~ 11187782 (+)
LOC120553063 NA non-coding upstream 897426 11092190 ~ 11092674 (+)
G227217 NA non-coding upstream 935905 11043412 ~ 11054195 (+)
G227363 NA non-coding downstream 250582 12243534 ~ 12243755 (+)
G227499 NA non-coding downstream 994761 12987713 ~ 13043018 (+)
G227510 zc3hc1 non-coding downstream 1078593 13071545 ~ 13075348 (+)
G227639 NA non-coding downstream 1500449 13493401 ~ 13493861 (+)
G227646 NA non-coding downstream 1523530 13516482 ~ 13531547 (+)
G227278 LOC104928793 other upstream 232783 11689169 ~ 11757317 (+)
G227216 NA other upstream 877195 11102836 ~ 11112905 (+)
impdh1b LOC104968094,LOC103355171,LOC102293685,LOC102194436,LOC104918784 other upstream 1003899 10948285 ~ 10986201 (+)
G227141 dcn,LOC103382665 other upstream 1252597 10732069 ~ 10737503 (+)
G227121 kera other upstream 1290382 10697254 ~ 10699718 (+)
st8sia1 st8sia1 other downstream 114000 12106952 ~ 12126545 (+)
plxna4 plxna4 other downstream 666316 12659268 ~ 12910189 (+)
nrf1 nrf1,LOC103372774 other downstream 1012387 13005339 ~ 13022947 (+)
yeats4 yeats4 other downstream 1481597 13474549 ~ 13479115 (+)
LOC120553473 LOC102193240,LOC101463811,LOC103146510,LOC103459282,LOC106521789,LOC108235098 other downstream 1681852 13674804 ~ 13798380 (+)

Expression


Co-expression Network