LOC120553123


Basic Information

Item Value
gene id LOC120553123
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 12900314 ~ 13004473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU308709
CGCCCCTTTCTACTGAGACTCACTCAGCTCAACAGAAGCACCCTACCACCGTCGTTGTTGTGAAGTTATCTGCTTGCTGGGCTACAAACAAAgccaaaaagaacaacaaaagcaGTTGAGGTTAATTATATAGCGTTAGTCTTAAAAAAGGTGCATGTCCTAATTTTGGAAAACGTCACTGCAGAGAAAGAGCAACTGACGCTCGACCAAAGTAAACTTTCCAAATTAACGTTACTCCAATTAGCATCACCTGTGTCGTTCAGGGCGATGTGCTATTTTCATGGCCTGTATACATTTCTACATGAAACTGTTGATTCCCCCAAGAGGTCAACATGCTCGAGATCCAATTAGGTTACTACATATGAAAGGGATGTCAAATACATTTGGAAGGTACAAGGGACATAAGGTGATGAGATGGACAGTGTTTGGTGATGCTACAAGGTGACAGTTCCATGGATACCCGACTGAAAGGATGGAAGGGTGATGTCTTTGGAAGTGCTGAATCAGCAGAGCCTATGATAGGCTGGCTGGATACTTTGTCTTGCTTGTGACCTTCGCTGCTCCTTTGATGTCCATAACAAATTGCCCCAGGGTATCAGCATGATCATGCAGTGGCAACACAGCACAAGAATAACAACAAGCTTCAGCATGCTGcggtgtgcgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgttgccactGCAGCTAGACACTTTTTAATTACAGTCCGAGTGTCTTTCCTTTCTGGAAAAACTTCATGGTCCTGCACATTTCAATTCATGCCTGTGAGACCAAATAAACTGATTCAAAACACCCTCTGCATGTGGAAACATTGCTGTGTCAAATAACCATGTTTAATTACTAAAAGCCTACAAAAGCTTACATTTTTGCTTTTCTGTGGCTGTAGGCAGAATGTTAAATTACAGGTGTGTGCACATTCAATGATTGCCTCCTCACCTGTTTTTATTCCCCCTTGTACAGTAGTCAGTGGCCTTAGTTATTAATGTGTTTAAATACGTGATT
>XR_005638104.1
CTCACTCAGCTCAACAGAAGCACCCTACCACCGTCGTTGTTGTGAAGTTATCTGCTTGCTGGGCTACAAACAAAgccaaaaagaacaacaaaagcaGTTGAGGTTAATTATATAGCGTTAGTCTTAAAAAAGGTGCATGTCCTAATTTTGGAAAACGTCACTGCAGAGAAAGAGCAACTGACGCTCGACCAAAGTAAACTTTCCAAATTAACGTTACTCCAATTAGCATCACCTGTGTCGTTCAGGGCGATGTGCTATTTTCATGGCCTGTATACATTTCTACATGAAACTGTTGATTCCCCCAAGAGGTCAACATGCTCGAGATCCAATTAGGTTACTACATATGAAAGGGATGTCAAATACATTTGGAAGGTACAAGGGACATAAGGTGATGAGATGGACAGTGTTTGGTGATGCTACAAGGTGACAGTTCCATGGATACCCGACTGAAAGGATGGAAGGgcTTGGAGAAGGCCGCCCCCTGCCGCCACTGAGGACAACTACACTAATACAGACAAGAGCGCCTCAACAGTTACACACTCAAGAGTTAGGGTTTTGTCGTATGCAACTAGCTACCATCTCCAACGCTTGtgcaaaacagaaaagaaaactgCTAAGTCAGGAGCTGGACACAAGGGTGAACGGTGTGCCGAGAGCTGGAGACACCCTGGACGAtggaaagaggaaggaggatCGGATCACCTCGCCCACAGAGCCTCTCACCTCGACACACTGAGCAGGGGGACTGAAGTATGCCAATATGGCCAGCTTTCAAGCATCGCCCCTTGAAGCTCTCCCTGTGGTGAAGCTGAGGGATCCCCCGCATTGCACTGTGGGAAATGCCGACTTCAGCTCCGAACCACCCTTCAGATATCTTAAGTGCGCCCTGGGAAGTGCGGTCCTCAGCTCTCCAGACTCATGAAGGCCACCACCTGCTCCAGCTTGAAGGCCAGCCTCTGTTTCCGGGCTGCATCGTCCTGCTCCAGTGAACACACAATCTGCCAGCAGGACAGTGagCTGCAGCCGCTCGAGGACAGGCCCGGTCTTTGGCTGGATAATTCTGGGCATGTGTGAAGGAGAGATGGATTTGCCAGGAAGCAAGTCTTTAGAGCAAATTGAGCAAAGGAAAAGGCAGATTCTGTAGAATTTTTACTGCTGTAGCAGTGAGATCATCCTCACCAACTGCATCACAGTAGGGAGGTGAAAACTGGCCAACGAATCATCGGTTCTCCACTTCCTGCCATCGGTACTGTCCAATGCAAGTGGTCATACTATACAGTACTATCAAAttttatgacgtttttatgagtttttatagcatactgtacaatactataactttttctgACTTCTGTTATGGcacattatactatgacttttttttaaggaCATACCATAACATTTTTACCAGcattttttgtgaaatactATGACAAAAGTTTAAACCATCGTCAGAGTGGTTTCTCAATCATCATAATTAACGTCATACAGATTATTAGCGTTCATATTGAAACAGGGAAATAATGGCTAAAATGTCAATTAAAACTGAATCACTCAaataatttaaagtgctcatattatgctcattttcaggttcataattgtatttagaggatGTACc
>XR_005638105.1
CTCACTCAGCTCAACAGAAGCACCCTACCACCGTCGTTGTTGTGAAGTTATCTGCTTGCTGGGCTACAAACAAAgccaaaaagaacaacaaaagcaGTTGAGGTTAATTATATAGCGTTAGTCTTAAAAAAGGTGCATGTCCTAATTTTGGAAAACGTCACTGCAGAGAAAGAGCAACTGACGCTCGACCAAAGTAAACTTTCCAAATTAACGTTACTCCAATTAGCATCACCTGTGTCGTTCAGGGCGATGTGCTATTTTCATGGCCTGTATACATTTCTACATGAAACTGTTGATTCCCCCAAGAGGTCAACATGCTCGAGATCCAATTAGGTTACTACATATGAAAGGGATGTCAAATACATTTGGAAGGTACAAGGGACATAAGGTGATGAGATGGACAGTGTTTGGTGATGCTACAAGGTGACAGTTCCATGGATACCCGACTGAAAGGATGGAAGGgcTTGGAGAAGGCCGCCCCCTGCCGCCACTGAGGACAACTACACTAATACAGACAAGAGCGCCTCAACAGTTACACACTCAAGAGTTAGGGTTTTGTCGTATGCAACTAGCTACCATCTCCAACGCTTGtgcaaaacagaaaagaaaactgCTAAGTCAGGAGCTGGACACAAGGGTGAACGGTGTGCCGAGAGCTGGAGACACCCTGGACGAtggaaagaggaaggaggatCGGATCACCTCGCCCACAGAGCCTCTCACCTCGACACACTGAGCAGGGGGACTGAAGTATGCCAATATGGCCAGCTTTCAAGCATCGCCCCTTGAAGCTCTCCCTGTGGTGAAGCTGAGGGATCCCCCGCATTGCACTGTGGGAAATGCCGACTTCAGCTCCGAACCACCCTTCAGATATCTTAAGTGCGCCCTGGGAAGTGCGGTCCTCAGCTCTCCAGACTCATGAAGGCCACCACCTGCTCCAGCTTGAAGGCCAGCCTCTGTTTCCGGGCTGCATCGTCCTGCTCCAGTGAACACACAATCTGCCAGCAGGACAGTGagCTGCAGCCGCTCGAGGACAGGCCCGGTCTTTGGCTGGATAATTCTGGGCATGTGTGAAGGAGAGATGGATTTGCCAGGAAGCAAGTCTTTAGAGCAAATTGAGCAAAGGAAAAGGCAGATTCTGTAGAATTTTTACTGCTGTAGCAGTGAGATCATCCTCACCAACTGCATCACAGTAGGGAGGTGAAAACTGGCCAACGAATCATCGGTTCTCCACTTCCTGCCATCGAGAAGCACTGAAGAAGCATCAGCAGAGATTTCCTTCCTGAGACACAGGTTTCCATTAGCCTACTCTCTAGGTAAGAATGTCTTTTCTTTAAGCTGCAGCATAAAGGAGAGCGAGGAGGAGGACATCTCTTCCTCTACAGTGTTAACTTCCCTTTGCAGCCTTCTTTCATAGCTGCAGAATTCTGCCTTTAAAATCCTCTTCCTGTCATGACCCTTACTTTGGCATGGTTGGACAGCAGAGTGAAGCAGAACCAGATCAACCCTTAGTCATTCACTACTATATGACGGAGGCTTTTCcaactgaataaaaaaataataaaatctgtGTATTACTAGGGCGCCTGGGtagtagctcacctggtataGCGTGtgtccatatatagaggtttactcctcaatgcagcgcccgtgggttcgactccaacctgtggccGTTTGCTGCATGTaatttcccctctctcccctttcatgtcttcagctgtcctataaaaataaaggcctaaaaagcCCCAATACAGGCTTACATTTCTGCTTGGGCAGCTCCCTACAGTAGCTAAATTCTCTGTCCACACTGATTGTTTTTGCATTTGCATACCTTCTTACATTATCCAAACATATCCATGCAATTTCCTCACacttatttgtgtttttgggAGACCAGTGACACTAACCCACACAGGACTAATGGGTACAGTCCTGAGCCTGAAGCTCCCCATTTGGTTCCACCCATTCAAGCAGTGCACATATATTCTCGTCCCGAGGTTTGCCTTGTGACGAAGCTACCAACACAAATACTCTGAACTGCTTCAC
>XR_005638106.1
CTCACTCAGCTCAACAGAAGCACCCTACCACCGTCGTTGTTGTGAAGTTATCTGCTTGCTGGGCTACAAACAAAgccaaaaagaacaacaaaagcaGTTGAGGTTAATTATATAGCGTTAGTCTTAAAAAAGGTGCATGTCCTAATTTTGGAAAACGTCACTGCAGAGAAAGAGCAACTGACGCTCGACCAAAGTAAACTTTCCAAATTAACGTTACTCCAATTAGCATCACCTGTGTCGTTCAGGGCGATGTGCTATTTTCATGGCCTGTATACATTTCTACATGAAACTGTTGATTCCCCCAAGAGGTCAACATGCTCGAGATCCAATTAGGTTACTACATATGAAAGGGATGTCAAATACATTTGGAAGGTACAAGGGACATAAGGTGATGAGATGGACAGTGTTTGGTGATGCTACAAGGTGACAGTTCCATGGATACCCGACTGAAAGGATGGAAGGgcTTGGAGAAGGCCGCCCCCTGCCGCCACTGAGGACAACTACACTAATACAGACAAGAGCGCCTCAACAGTTACACACTCAAGAGTTAGGGTTTTGTCGTATGCAACTAGCTACCATCTCCAACGCTTGtgcaaaacagaaaagaaaactgCTAAGTCAGGAGCTGGACACAAGGGTGAACGGTGTGCCGAGAGCTGGAGACACCCTGGACGAtggaaagaggaaggaggatCGGATCACCTCGCCCACAGAGCCTCTCACCTCGACACACTGAGCAGGGGGACTGAAGTATGCCAATATGGCCAGCTTTCAAGCATCGCCCCTTGAAGCTCTCCCTGTGGTGAAGCTGAGGGATCCCCCGCATTGCACTGTGGGAAATGCCGACTTCAGCTCCGAACCACCCTTCAGATATCTTAAGTGCGCCCTGGGAAGTGCGGTCCTCAGCTCTCCAGACTCATGAAGGCCACCACCTGCTCCAGCTTGAAGGCCAGCCTCTGTTTCCGGGCTGCATCGTCCTGCTCCAGTGAACACACAATCTGCCAGCAGGACAGTGagATTCTGTAGAATTTTTACTGCTGTAGCAGTGAGATCATCCTCACCAACTGCATCACAGTAGGGAGGTGAAAACTGGCCAACGAATCATCGGTTCTCCACTTCCTGCCATCGGTACTGTCCAATGCAAGTGGTCATACTATACAGTACTATCAAAttttatgacgtttttatgagtttttatagcatactgtacaatactataactttttctgACTTCTGTTATGGcacattatactatgacttttttttaaggaCATACCATAACATTTTTACCAGcattttttgtgaaatactATGACAAAAGTTTAAACCATCGTCAGAGTGGTTTCTCAATCATCATAATTAACGTCATACAGATTATTAGCGTTCATATTGAAACAGGGAAATAATGGCTAAAATGTCAATTAAAACTGAATCACTCAaataatttaaagtgctcatattatgctcattttcaggttcataattgtatttagaggatGTACc

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU308709 False 1035 lncRNA 0.43 4 12976386 13004473
XR_005638104.1 False 1621 lncRNA 0.45 8 12902198 13004455
XR_005638105.1 True 2055 lncRNA 0.48 9 12900314 13004455
XR_005638106.1 False 1503 lncRNA 0.44 7 12902198 13004455

Neighbor

gene id symbol gene type direction distance location
exoc4 exoc4 coding downstream 345651 12433896 ~ 12554663 (-)
lrguk NA coding downstream 467177 12415814 ~ 12433137 (-)
col7a1l LOC103371861,LOC108235101,LOC106515058 coding downstream 487444 12353644 ~ 12412870 (-)
si:dkey-117n7.5 LOC103382769,LOC107385417 coding downstream 551054 12333944 ~ 12349260 (-)
ucn3l LOC103371858,LOC106936223,LOC103146475,LOC103460978 coding downstream 570315 12327666 ~ 12329999 (-)
zc3hc1 zc3hc1 coding upstream 62940 13067413 ~ 13075321 (-)
cax1 LOC103382807 coding upstream 78767 13083240 ~ 13094167 (-)
smo smo,LOC102780724 coding upstream 94764 13099237 ~ 13108249 (-)
tspan33a tspan33 coding upstream 106607 13111080 ~ 13118409 (-)
lrtm2a lrtm2,LOC103374524 coding upstream 383434 13387907 ~ 13412926 (-)
G227488 NA non-coding downstream 260539 12639434 ~ 12639775 (-)
G227407 NA non-coding downstream 930836 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 951113 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 993494 11895643 ~ 11906820 (-)
G227384 NA non-coding downstream 1068637 11831029 ~ 11831677 (-)
G227627 cpsf6 non-coding upstream 403363 13407836 ~ 13454828 (-)
G227629 cacna2d4a,cacna2d4 non-coding upstream 435519 13439992 ~ 13441507 (-)
G227636 NA non-coding upstream 459637 13464110 ~ 13472016 (-)
G227637 yeats4 non-coding upstream 470666 13475139 ~ 13477724 (-)
G227692 LOC108235098,LOC103459282 non-coding upstream 725004 13729477 ~ 13735702 (-)
G227429 LOC104958361,LOC103370548 other downstream 612160 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 1051373 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 1223482 11617355 ~ 11676832 (-)
hgfa LOC103365344,LOC104958230 other downstream 1417736 11458581 ~ 11482578 (-)
G227197 LOC102293685,LOC104918784,LOC102194436 other downstream 1919055 10980198 ~ 10981259 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other upstream 33678 13038151 ~ 13066528 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other upstream 121695 13126168 ~ 13344461 (-)
LOC120553407 napepld,LOC106940535 other upstream 481413 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 512034 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 639110 13643583 ~ 13659272 (-)

Expression


Co-expression Network