G227627 (cpsf6)


Basic Information

Item Value
gene id G227627
gene name cpsf6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13407836 ~ 13454828 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU308795
GCCATTGGCTCGGTTTTCAAAGAACTTGATCTCCAGCACATCTGTGATGCCTACTGACCGGATAGCTTCTGTCAGGTCCTCGTCTGTCGTCCACCATGTGAGGTTTCCTATGTACAGGGCAATCCTTTTGCCTGTGTAAGTGTACACCACATTGGGCTGAGAACTCTTCCCTCCCTCTGAGCCACCTGGTGTAGGCAGTGTGTCCAGGTAGTCGCGGTCTTCTGGAGCATCACCATTGTTGGCTGATGGGGATATTACATCATCATACAGGTCAATCTGTTCGTGGACTGGGTAGTCAGCTTCCTGGTTGAATTCCTCCTCTACGTCGGCGTAGATGTCGATGTGATCCACGCCGTCCGCCATTTTCCTCTTTCCCGTCGCTCTCTCCGCCCGGCGGTGCAGAGCAACACTGACTAACTGAGCCACAAAcaatgagacagagagggacaaacacacacacacacacacacacacacacacacacacacacacacacacaccaaaaca

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 6 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308795 True 507 lncRNA 0.52 4 13407836 13454828

Neighbor

gene id symbol gene type direction distance location
tspan33a tspan33 coding downstream 289427 13111080 ~ 13118409 (-)
smo smo,LOC102780724 coding downstream 299587 13099237 ~ 13108249 (-)
cax1 LOC103382807 coding downstream 313669 13083240 ~ 13094167 (-)
zc3hc1 zc3hc1 coding downstream 332515 13067413 ~ 13075321 (-)
exoc4 exoc4 coding downstream 853173 12433896 ~ 12554663 (-)
trnak-cuu_13 NA coding upstream 354779 13809607 ~ 13809679 (-)
fbxl14b fbxl14,LOC100698480,LOC103368248,LOC101486866,LOC106521787,LOC108235106,LOC107094604,LOC104959755 coding upstream 407951 13862779 ~ 13866499 (-)
LOC120553476 phtf2 coding upstream 501832 13956660 ~ 14001984 (-)
LOC120553471 rsbn1l,LOC104950472,LOC102308177 coding upstream 553889 14008717 ~ 14047664 (-)
ptpn12 ptpn12 coding upstream 598738 14053566 ~ 14106120 (-)
LOC120553123 NA non-coding downstream 403363 12900314 ~ 13004473 (-)
G227488 NA non-coding downstream 768061 12639434 ~ 12639775 (-)
G227407 NA non-coding downstream 1438358 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 1458635 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 1501016 11895643 ~ 11906820 (-)
G227636 NA non-coding upstream 9282 13464110 ~ 13472016 (-)
G227637 yeats4 non-coding upstream 20311 13475139 ~ 13477724 (-)
G227692 LOC108235098,LOC103459282 non-coding upstream 274649 13729477 ~ 13735702 (-)
G227717 NA non-coding upstream 342756 13797584 ~ 13801503 (-)
G227784 NA non-coding upstream 494713 13949541 ~ 13949881 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 63375 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 341308 13038151 ~ 13066528 (-)
G227429 LOC104958361,LOC103370548 other downstream 1119682 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 1558895 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 1731004 11617355 ~ 11676832 (-)
LOC120553407 napepld,LOC106940535 other upstream 31058 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 61679 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 188755 13643583 ~ 13659272 (-)
waslb LOC103370764 other upstream 969409 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 1179282 14634110 ~ 15053285 (-)

Expression


Co-expression Network