G227629 (cacna2d4a,cacna2d4)


Basic Information

Item Value
gene id G227629
gene name cacna2d4a,cacna2d4
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13439992 ~ 13441507 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU308797
GTAGGCGTGGCAGGACTCGGGGCGTCTGCGAATCTTCTGGGACCTCATCCTGTCACACTTCACTGAGGCATTATATTTCACTTCTTTGGGCTGCATGGTGAGGGGTGGGTACTGTCTGGAGCAGTCACAGTCTGCCTGCACCACCAACATCAACAGGTTGCTCTCAGGTATCTGTTGCACCACAAAcatcTTCTGGCAGCGTCCACACTTAATAATGCTGTTGGTCTCTTTGACTGATGGCTCGTAGACGAAGCTGGGGTACTCGGTGTCACACGGCTG

Function

symbol description
cacna2d4a Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4).
cacna2d4 Enables voltage-gated calcium channel activity. Involved in calcium ion transmembrane transport and detection of light stimulus involved in visual perception. Part of voltage-gated calcium channel complex.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308797 True 279 lncRNA 0.53 3 13439992 13441507

Neighbor

gene id symbol gene type direction distance location
lrtm2a lrtm2,LOC103374524 coding downstream 27066 13387907 ~ 13412926 (-)
tspan33a tspan33 coding downstream 321583 13111080 ~ 13118409 (-)
smo smo,LOC102780724 coding downstream 331743 13099237 ~ 13108249 (-)
cax1 LOC103382807 coding downstream 345825 13083240 ~ 13094167 (-)
zc3hc1 zc3hc1 coding downstream 364671 13067413 ~ 13075321 (-)
trnak-cuu_13 NA coding upstream 368100 13809607 ~ 13809679 (-)
fbxl14b fbxl14,LOC100698480,LOC103368248,LOC101486866,LOC106521787,LOC108235106,LOC107094604,LOC104959755 coding upstream 421272 13862779 ~ 13866499 (-)
LOC120553476 phtf2 coding upstream 515153 13956660 ~ 14001984 (-)
LOC120553471 rsbn1l,LOC104950472,LOC102308177 coding upstream 567210 14008717 ~ 14047664 (-)
ptpn12 ptpn12 coding upstream 612059 14053566 ~ 14106120 (-)
LOC120553123 NA non-coding downstream 435519 12900314 ~ 13004473 (-)
G227488 NA non-coding downstream 800217 12639434 ~ 12639775 (-)
G227407 NA non-coding downstream 1470514 11966652 ~ 11969478 (-)
LOC120553250 NA non-coding downstream 1490791 11944330 ~ 11949201 (-)
LOC120553249 NA non-coding downstream 1533172 11895643 ~ 11906820 (-)
G227636 NA non-coding upstream 22603 13464110 ~ 13472016 (-)
G227637 yeats4 non-coding upstream 33632 13475139 ~ 13477724 (-)
G227692 LOC108235098,LOC103459282 non-coding upstream 287970 13729477 ~ 13735702 (-)
G227717 NA non-coding upstream 356077 13797584 ~ 13801503 (-)
G227784 NA non-coding upstream 508034 13949541 ~ 13949881 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 95531 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 373464 13038151 ~ 13066528 (-)
G227429 LOC104958361,LOC103370548 other downstream 1151838 12284926 ~ 12288154 (-)
cracr2ab LOC102301749,LOC103365394 other downstream 1591051 11837248 ~ 11848941 (-)
pcloa pclo,LOC107085986,LOC103358500,LOC102794373,LOC108235068,LOC106514760 other downstream 1763160 11617355 ~ 11676832 (-)
LOC120553407 napepld,LOC106940535 other upstream 44379 13485886 ~ 13508247 (-)
LOC120553470 wnk1 other upstream 75000 13516507 ~ 13617756 (-)
LOC120553486 NA other upstream 202076 13643583 ~ 13659272 (-)
waslb LOC103370764 other upstream 982730 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 1192603 14634110 ~ 15053285 (-)

Expression


Co-expression Network