LOC120553486


Basic Information

Item Value
gene id LOC120553486
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13643583 ~ 13659272 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU308919
TGTATTTAACACCTTTATTAAGCTACGTATTTATGTAGTACTCATAAAATAAGATATAGTTTAATAACATGTAAGACAGTACAACAGTTCTGTGAAAAGATAGACAATAATGTTAAAGTCAAGAAAGAAGGCAAAAAGTCGACTGTATGCATGTTATGAGCTATGGTGAGTTGGTCTGTGTGGTAGTAAAGTCTAAAGTTATAATAATCAGCAGGAGTGTGTgcatcagtcagtcagtgaatGCGCATCATGAGCCATGGGAAGTGTCCAGTGCGCTGCATGCCGAAGGTACTGATGAAGAAGTTGAGGACTGTGGTGATGAAGACTATGATGGTCGTTACGTTGTTCAGGTAATCCAGACGTCTCTGCAGGGTGGAGTTATTCAAATCCCGACGGCCTGTGACACatgtacgcacgcacacacacaaaaagagaggGTTCAAAATTCACTTggttctgacacacacagagacttctAGTTTGGCCTGGATGCTCTACATTATGTTACCTTAAATACACAAATGGACAAACTACATGTTCACTTCTCTCCTTCAAACACTGACATCTTTTTACActtatggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatagctTGTGATATTAGGCCCATATTCACTCTGTTACTTTACTATTAAGCAATCATTAGcaaaaaacacaataagcataGCTTCTGTTAAATCACTACATTTATTCAGCTTTTTGGACGAGAATGTGTACGATGCCTCTTATTTATATTACCCTGGTTTGTGTCTGGTATTGAacttcaaaatattttttttaatgtcaaacaagtttttaaaagaagttatatttaaaaagaaaaccttttttttttttataattttaccAATAACCAAACAATGAGGAAACACAATtgtaaaaaagtttgaaatacaCATAATGGAACACAATTTTTCCACAGGTTATTGCAGTAAATAAAACAATGCATATTCACATAGATATCCAGTTGTTAAAGTGAAAATATGTTTAGTTGGATTACAGTGTGAATCACATTTTAAAAGCCTGAATAATAAATGATGATGTTTGAACATGTGCAAATTGTATGTGAATTGTCAGCAGTGAATTTCAACTTTGAATCAATGTATTTAAGTGTGTGTACAGATGAAATACACTGAGTGCATatgtggttgtgtgtatgtgtgtcagaaGTGGAGTCGAGCCAGCAGCCAGCGGAAGAAGCCAGTCCTCTTGGATCCGAAGAAGCTCAGGAAGAAG
>XR_005638170.1
GAAGGCACACGTGCTAGTGTGGTGCATGTAAACACAGTGTGGGCTGACATCATGTGCTTTGGTTTCATTTCTTTTACTCAGACAACGCTAGCTCTTGCAAACTTGTATGTAGCTAACCAACGGTGTCCATGAGTCCATCGCCCGTTTTGGACTCTTCGAGTGCCACAAAAGCAAAGCAAACCCGGCCCTCTGCGTAAGAGGAAAACTCTCTCTGCCCGAAGGCATCATCTTTCTGTTTGGCTTTATTATAACTGCCATTTAGGGTAAGGGAGCAGGAAGAAGGGGGAAAGGAGGAGAAAGCAGAAAAGCAGATGAAGAGAAACAGacagcaacacaaagaaaggagTCAGCAtgaagggaggaagagaggcagTGACGAAGAGATGAGTTGTGTTTTCTCTTGCTGGCTAACTGGAAGCAGAACAGTGTCTGAGTTACTACTTACTCGAATGATTTGGGCTGTAAACATGCTTCAGTTTTTGCCTGagaccctaaccttaacctttcGATGACTTTTTCCACATGATTTTCAAAGGACAAATCACAGGTCAGTTAGATAACCCTGAGCAGACTTAATAGCACCTGTTCAAAGTTATAATCCTGAAGATTTCATTATATCAAACCCAGTTGTTATAGTATTCATGTAATTTTTTCAGATGCTGCCCCAAATGTATATTACACGGGTCATTTTGAATGGAACGCTGGACatgtattattaattattaaaacaCTGGTGCAAACgtgatatgtcaatgttgtgtttctaCAGAGCAAAACTGAACTTTTTCAGGGTCGACAGTGTTAACAAATGTTTCCACttcttttcatattttattaaagGGTCTCAATGATGGAAAT
>XR_005638171.1
GAAGGCACACGTGCTAGTGTGGTGCATGTAAACACAGTGTGGGCTGACATCATGTGCTTTGGTTTCATTTCTTTTACTCAGACAACGCTAGCTCTTGCAAACTTGTATGTAGCTAACCAACGGTGTCCATGAGTCCATCGCCCGTTTTGGACTCTTCGAGTGCCACAAAAGCAAAGCAAACCCGGCCCTCTGCGTAAGAGGAAAAATGAGCCGAAGTCTGTTTGGAGTTTAAAACCCCCCACTGGGCACACAAGCTTTCATGCCTTGGCCATGTGTGGCATCCCAGGACATTCCACCCAGCGGCTTCCTGGCTTTTTAATGGCTCGGCCTTCATCACCATCCACAACACACACTTCCttcctctgtgtttgtgtgtgcacgagGGCATTCCTGCTTCCCGACTTCCACGAATGCTGCTGTTTTGTGCCAAAGCTGCATCCCAAAATGTGAGACATTTAAAGAAACAGACAGATCTAGACACTGCCTGGGGTTAAAAATATGGATACACTGTGGAAAAATGTAATCTCTGTGTATTATCAACAGATGAATTCTACCAGAGAATGTGTGACTGTGAGTTTGGGAGGAATTT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0030902 hindbrain development biological_process
GO:0007160 cell-matrix adhesion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308919 True 1329 TUCP 0.37 2 13651662 13659272
XR_005638170.1 False 858 lncRNA 0.41 3 13651086 13653911
XR_005638171.1 False 589 lncRNA 0.47 3 13643583 13653911

Neighbor

gene id symbol gene type direction distance location
lrtm2a lrtm2,LOC103374524 coding downstream 230657 13387907 ~ 13412926 (-)
tspan33a tspan33 coding downstream 525174 13111080 ~ 13118409 (-)
smo smo,LOC102780724 coding downstream 535334 13099237 ~ 13108249 (-)
cax1 LOC103382807 coding downstream 549416 13083240 ~ 13094167 (-)
zc3hc1 zc3hc1 coding downstream 568262 13067413 ~ 13075321 (-)
trnak-cuu_13 NA coding upstream 150335 13809607 ~ 13809679 (-)
fbxl14b fbxl14,LOC100698480,LOC103368248,LOC101486866,LOC106521787,LOC108235106,LOC107094604,LOC104959755 coding upstream 203507 13862779 ~ 13866499 (-)
LOC120553476 phtf2 coding upstream 297388 13956660 ~ 14001984 (-)
LOC120553471 rsbn1l,LOC104950472,LOC102308177 coding upstream 349445 14008717 ~ 14047664 (-)
ptpn12 ptpn12 coding upstream 394294 14053566 ~ 14106120 (-)
G227637 yeats4 non-coding downstream 165859 13475139 ~ 13477724 (-)
G227636 NA non-coding downstream 171567 13464110 ~ 13472016 (-)
G227627 cpsf6 non-coding downstream 188755 13407836 ~ 13454828 (-)
G227629 cacna2d4a,cacna2d4 non-coding downstream 202076 13439992 ~ 13441507 (-)
LOC120553123 NA non-coding downstream 639110 12900314 ~ 13004473 (-)
G227692 LOC108235098,LOC103459282 non-coding upstream 70205 13729477 ~ 13735702 (-)
G227717 NA non-coding upstream 138312 13797584 ~ 13801503 (-)
G227784 NA non-coding upstream 290269 13949541 ~ 13949881 (-)
G227804 NA non-coding upstream 480907 14140179 ~ 14143259 (-)
LOC120553016 NA non-coding upstream 519473 14178745 ~ 14219598 (-)
LOC120553470 wnk1 other downstream 25827 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 135336 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 299122 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 577055 13038151 ~ 13066528 (-)
G227429 LOC104958361,LOC103370548 other downstream 1355429 12284926 ~ 12288154 (-)
waslb LOC103370764 other upstream 764965 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 974838 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 1396203 15055475 ~ 15089983 (-)
G228191 NA other upstream 2111966 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 3089570 16748842 ~ 16823432 (-)

Expression


Co-expression Network