LOC120553016


Basic Information

Item Value
gene id LOC120553016
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14178745 ~ 14219598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309112
AGGAGAAGTGGATGCCACAATTGAGATGAAACAACTTGCAGAGGTAGGTCATCAATGTTGTTTAATAATGTCCATAATCTGAAGGGACTACCTAGTCTCACATAAAGCGAAGGTGAGAACATACAGCAAGCTGTTACAGGATCGTTTGACTCTTTTACCAACCTACAGAAGTGTGAAAATAAACCCTCTCTTAGAAATAAAGCACACAGTTTACTACACATGACACACATTTCACATAAATAATTTCATACAAACAAAAGTCACATTTTGGACATATTTGGAATTATTGCACATCAGAAATATGAATTCCACATGCTGTTGCTGTCCTGTGTTCAGTTTTCAGCTTTGTAGTCACGTTTGTGTCCAATTCAGTTCAATATTTACTCaacttttagctctgttttggtctccaccaactcttgAGAGAAATATCTGACccctttagctgctaaatgctgcaAATGCTCATATAAGGGATCTCTTCAGACCAGCACTGTTTCTTTAAAGCTTTTAGCACTAGACTGAGAAGCGTAACTCAGCTCAGTGTGCAACCCCTAAACTTCCTGTCTACTCATAAATTAGATCCAGGCAAGCTCAAATGGCTAATAATGGTATTTATCAGCAGTAACTTTATGCCTGAACTGAACTCAGTGTCAACCAATTAAGCAAGATATTCAAATGATCCTGCTCCTGTTGGGTCCAGTTGGGTGCTGTGGGGTTTGACTTTAAATGTCAAcctcctgtttgttttttatgtaaaaaataagCTCCTCACTTTCTCCTCCTGAGCAGAATCTGAATAAAGCCTAAATGGACTGTTGTCGGAAACCATAAGCTGATTTAGTAGTCCTGGGATATTACAAGAATGTGACACATGCTTGCAATTGTGTGACATTACTTCTGCGTTGTTATGAGGTGGATAATTATTCAAGATGAAATTGCAATAGATATGGTCTGCTGAGGTTTAATGATTTATTCAAGGCTGTAAGTTGTTATGATCTAATATTCAGCGCGGTGGGATGGGAAGTTTCTTTTGCTTGCATTATCAgttcaatttatttttcaagGTCTCACTCCTACATAGAGTTCTTTATAGAGACATGAGGAGGTCTGAGAGAATAGCAGAGACACATAGGAGGAGGCTGAGAGAGGATTTGATCCTGGACCAGCGGGGATCCATGGGAATCTAAAGGTGGGTATCAACCATTGTGGCATCTGTGGGAAAGAGCCTGAATTATTTAAAACAGCTCTGGCATATGAAGGGGAAGTTGTGTTTGAATAGATTGTTGCCatcctctgttttttttgccCGAGGGTGTATACGCCTTATTCCTGCGTTCCCCCGGTTTTGATCTGACTGCTATAAACCTcatatttccaaaatgtcaaaatgttcgGCGAAATAAAACAGCCTCATTTTGACTTTGACAGccgtgcatttttttttttttaaatcatgcaATGGAGTCCTCAGGTTATGAAACTTGATGGAGTTATACAAGGTCACATAATCCTCAAGTTCAGGTAAAATCATGAAATTCATCAGAATTGGAGTAATGGGGGTTTTTCATCTGACAGCTGCAATAatgtagtgtgtttgtgtacagtagGCTTAATGTATGAGTGTTGTACTACTGTATCCACCGCCCTCAGGCTACACTTTCTTTCTGTAATAAATAATGCTCTTTTGTGTTCTCTGCTTCATTTGTTCCCTGTTGTAACGTCAGTGCTGCTC
>XR_005638083.1
CACAACATGGCCACATCACCCTTCAGGTTGATAAGGCAAACATGTTAGCAAACTGCTGCCTATTTGCACATCCAGCTGACACGGAGCATCACAAGCATTCATTTGGAAGTTGCTTTTCTTGCCAAAAGTCAAATATTCACTTTCACTTTTTAGCTAGTTTTAAGTCTCCACCAACTTCTGAAGAAAACAAATCTGACTGAGCTGCTAAATGCTATTCTGCTATGTTGACATGCTAGTGGCTAACTGCGTCTGTCTGCCGTTTCCTGCTGGCCAGCTTGTCTTCAGGTGAAGAGGACATGATGTTCCATGAAGACTGTTGGCTGTGACTGAACCTCAGAAGACCGAACACAGAGGATGCTTCAGGAGTTGATGCGGAGACCTGCAACACCGGGAAACTGAACGCTGCTGACCACGTTCACCTGACACGAGGAAGTGTTTCAGAAAACACAGTGTGCAGATAAAACATACACCATCATCATACTTCCTTCTATTTAACCAAACTAAAATCTTTTCCATCACTATTCTCCTTGACCAGCCTCTGCTTAGTGCTTAGTCATAGTATCACCAGATGAACTACAGAAGAATTTGCTGGTTAGATTACAAATTTAACCTGCAATATGTAAAGCAGTTAAGTGGTGGAAGAAGCATTCACATGCTTTATTCACGAAAAAGTGGCAAGAAACTCTATTACAAGAGAACAATCCCACAGTCAAAATGTTACTGAAGTAAATGTACATAagtatcagcaaaatgtactcaaGTATCACAAGTAAAAGTTCTCTTTATCCAGAATAGCTAATTTAATAGTGTTATTAAGCTggcaaatacatacatacagttggAGCCAAAAAGTACCATATTTTTCCTTGAAATGTAGTGCAGTTGACAGGCATTAAATTAATTGTTACTTTTCATAACTGATGCAATGAATTACACTATTTTACTAGTAAAATCCTCTTGAATATACATAGAATAAAAATCACCTAATTGCATTAAATTCTTATATTTGAACAGCACCATAACAGCCTTTCAAATGATGATTTTGGTGTTGAAAACTAAAATACATATAAGGGTAGCTGCAACCTTTACACTCGTGAAATCGTGCATGAAAATCCAGGCTTTTGGCAATTTAATTAGTCAGATTTAATGTAATCTGTTACCTCGCTACTCACGCCTCGTCTCATGAGGCCTCACGGAGGATTTGTGAGGTCCTTTCTTCGGTGTGTCGGCCCACCACCatctcctccacctccacccaCCCTCAGTGCAACGCGGTTGCATTATTAAACTTGTATAAGATCATTAGCATACAAAGCAGGAAACCTACCGCGCTGCATACATATTTATCTGGACGTGCCTGACTTGTACGTGCATACACTCATACTGTAACCCCTTTACACACAGGCGTGACTGTCTTTCTGCTGCAGGAGTTCTGTGAACAGACACTATGAAGTGGATGTTACTATTGTAGAAGCACGACCAGTTTTAAAGGATAGATATTTATTTGAGCAACATCTGAAGAAAGACGAGTTAGCATTTGCCATAAACTATATATTAAAGCTAGTGCGGCTGCCTGTAAGACCaagaaaatgtgtgtatttggAAACCGAGCAGATGGAGTTTGGTTAGGTTCATCAGAGCAGTTTGCTTCGAGCATATTAAATATAGTTTACACACAGAGGAATATACATATTCATCTGCTGCACTCCGAAGCACATAatcaaacagagagaaagacaaacagagGGCATGTTTTTGTCAATACTTGGGTTACCTCTGACTATTGAATGACTGTGAAAtcatctccttttctctctccttcccttgtTCCCTTCCTCTTCAAATCCACCTTTTCTCCACAACCATGCTATCCCTGTTCCCTTTCCTTTTTGGAGATCATTTTCTACACTTTCTACCTACCTGATGACAGCACAAtccctccttctttttttttgacaatgcgGATTCCTCCGTTAATATCCCTTTCTCCTTCCTTCTTTTTCCTCCCTCCTGTAAGATTGCTGTTGTGTCTTATGGCTTTTTATTCCTACGTGATGGTAGATGGGTTCATGTAGGAGTAGAAGCCACTAAACACGCGGTGAGTGCTCAACGCGCTGGCCAACACACACAGCGAGCTTCCCGTGGCTATGACAGCTGCCATGTTCACATCAATGGCCCTGCCCATTACCAAGAATATGCACACAGTTAAAAAATAGTCCAGGGTATTCACTGCAGGGAGTGGCTACTGTTTCAGACCAGATTTGTTATGTGAATGACTTAATTAAATGGTTATTATACTTCATTGAACAGTTGGTTTTAAGACAATAGAGCAGAATGTTGATGTAGGCTACGGGTGGTCTGACTAATCAATCTGAGCAAATCTGAAGTTGTGAACAGACATACTTTTTCACAAAGACTTTCCACCTGCATGCTGGCTGCACGTGCCCTGAATTTCAAACTCAATCCTCTGCCCCGAGGTCGCTGTGCAAAACTGGAGCTGGATAGCTCTCAAAATAGAGATCAGGAGAAGTGGATGCCACAATTGAGATGAAACAACTTGCAGAGGTAGGTCATCAATGTTGTTTAATAATGTCCATAATCTGAAGGGACTACCTAGTCTCACATAAAGCGAAGGTGAGAACATACAGCAAGCTGTTACAGGATCGTTTGACTCTTTTACCAACCTACAGAAGTGTGAAAATAAACCCTCTCTTAGAAATAAAGCACACAGTTTACTACACATGACACACATTTCACATAAATAATTTCATACAAACAAAAGTCACATTTTGGACATATTTGGAATTATTGCACATCAGAAATATGAATTCCACATGCTGTTGCTGTCCTGTGTTCAGTTTTCAGCTTTGTAGTCACGTTTGTGTCCAATTCAGTTCAATATTTACTCaacttttagctctgttttggtctccaccaactcttgAGAGAAATATCTGACccctttagctgctaaatgctgcaAATGCTCATATAAGGGATCTCTTCAGACCAGCACTGTTTCTTTAAAGCTTTTAGCACTAGACTGAGAAGCGTAACTCAGCTCAGTGTGCAACCCCTAAACTTCCTGTCTACTCATAAATTAGATCCAGGCAAGCTCAAATGGCTAATAATGGTATTTATCAGCAGTAACTTTATGCCTGAACTGAACTCAGTGTCAACCAATTAAGCAAGATATTCAAATGATCCTGCTCCTGTTGGGTCCAGTTGGGTGCTGTGGGGTTTGACTTTAAATGTCAAcctcctgtttgttttttatgtaaaaaataagCTCCTCACTTTCTCCTCCTGAGCAGAATCTGAATAAAGCCTAAATGGACTGTTGTCGGAAACCATAAGCTGATTTAGTAGTCCTGGGATATTACAAGAATGTGACACATGCTTGCAATTGTGTGACATTACTTCTGCGTTGTTATGAGGTGGATAATTATTCAAGATGAAATTGCAATAGATATGGTCTGCTGAGGTTTAATGATTTATTCAAGGCTGTAAGTTGTTATGATCTAATATTCAGCGCGGTGGGATGGGAAGTTTCTTTTGCTTGCATTATCAgttcaatttatttttcaagGTCTCACTCCTACATAGAGTTCTTTATAGAGACATGAGGAGGTCTGAGAGAATAGCAGAGACACATAGGAGGAGGCTGAGAGAGGATTTGATCCTGGACCAGCGGGGATCCATGGGAATCTAAAGGTGGGTATCAACCATTGTGGCATCTGTGGGAAAGAGCCTGAATTATTTAAAACAGCTCTGGCATATGAAGGGGAAGTTGTGTTTGAATAGATTGTTGCCatcctctgttttttttgccCGAGGGTGTATACGCCTTATTCCTGCGTTCCCCCGGTTTTGATCTGACTGCTATAAACCTcatatttccaaaatgtcaaaatgttcgGCGAAATAAAACAGCCTCATTTTGACTTTGACAGccgtgcatttttttttttttaaatcatgcaATGGAGTCCTCAGGTTATGAAACTTGATGGAGTTATACAAGGTCACATAATCCTCAAGTTCAGGTAAAATCATGAAATTCATCAGAATTGGAGTAATGGGGGTTTTTCATCTGACAGCTGCAATAatgtagtgtgtttgtgtacagtagGCTTAATGTATGAGTGTTGTACTACTGTATCCACCGCCCTCAGGCTACACTTTCTTTCTGTAATAAATAATGCTCTTTTGTGTTCTCTGCTTCATTTGTTCCCTGTTGTAACGTCAGTGCTGCTCAATAAATTATGAATCACGCCTGTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309112 False 1735 lncRNA 0.39 1 14178772 14180506
XR_005638083.1 True 4284 lncRNA 0.40 3 14178745 14219598

Neighbor

gene id symbol gene type direction distance location
zgc:113263 LOC103358113 coding downstream 18676 14119739 ~ 14160069 (-)
ptpn12 ptpn12 coding downstream 72625 14053566 ~ 14106120 (-)
LOC120553471 rsbn1l,LOC104950472,LOC102308177 coding downstream 131081 14008717 ~ 14047664 (-)
LOC120553476 phtf2 coding downstream 176761 13956660 ~ 14001984 (-)
fbxl14b fbxl14,LOC100698480,LOC103368248,LOC101486866,LOC106521787,LOC108235106,LOC107094604,LOC104959755 coding downstream 312246 13862779 ~ 13866499 (-)
rassf8b rassf8,LOC103358112 coding upstream 22399 14241997 ~ 14262260 (-)
pkp2 LOC103399101 coding upstream 57254 14276852 ~ 14290030 (-)
nudt4b LOC104951656,LOC104933915,LOC103358110,LOC107384862 coding upstream 71224 14290822 ~ 14309611 (-)
ube2nb LOC104958109,LOC100699741,LOC104932591,LOC101482995,LOC102225258,LOC103382819,LOC107094607,LOC101068996 coding upstream 106499 14326097 ~ 14333939 (-)
mrpl42 mrpl42 coding upstream 115254 14334852 ~ 14338447 (-)
G227804 NA non-coding downstream 35486 14140179 ~ 14143259 (-)
G227784 NA non-coding downstream 228864 13949541 ~ 13949881 (-)
G227717 NA non-coding downstream 377242 13797584 ~ 13801503 (-)
G227692 LOC108235098,LOC103459282 non-coding downstream 443043 13729477 ~ 13735702 (-)
G227637 yeats4 non-coding downstream 701021 13475139 ~ 13477724 (-)
G227814 NA non-coding upstream 11945 14231543 ~ 14231806 (-)
G228019 NA non-coding upstream 550400 14769998 ~ 14770247 (-)
G228020 NA non-coding upstream 550900 14770498 ~ 14770967 (-)
G228021 NA non-coding upstream 554719 14774317 ~ 14774848 (-)
G228022 NA non-coding upstream 572647 14792245 ~ 14792469 (-)
LOC120553486 NA other downstream 519473 13643583 ~ 13659272 (-)
LOC120553470 wnk1 other downstream 560989 13516507 ~ 13617756 (-)
LOC120553407 napepld,LOC106940535 other downstream 670498 13485886 ~ 13508247 (-)
cacna1c cacna1c,LOC103459268,LOC106922075,LOC101471946 other downstream 834284 13126168 ~ 13344461 (-)
ube2h ube2h,LOC107690610,LOC107676921,LOC105888480 other downstream 1112217 13038151 ~ 13066528 (-)
waslb LOC103370764 other upstream 204639 14424237 ~ 14450589 (-)
grm8a grm8 other upstream 414512 14634110 ~ 15053285 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other upstream 835877 15055475 ~ 15089983 (-)
G228191 NA other upstream 1551640 15771238 ~ 15791853 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other upstream 2529244 16748842 ~ 16823432 (-)

Expression


Co-expression Network