G227970


Basic Information

Item Value
gene id G227970
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15054705 ~ 15057478 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309302
TTAGGTTTGAAGCAgtacagtttttatttattaagtggTTGGTTAACATTCTTGTCACATCTGAAAGGCTTCTCTAACTCTTCTCAAGTTCTCTAGAAAGTGAGCTTAATAACATATTACAGCTGATGAGGAATTAATGACAAGATCTTAAACAAAAGTCTTATGAGGTTTGATTTCTTTTCTTGACACattctaacaaaaaaaaaaaaaactccttcaAAAAGGAATGAGAGACAAAACCAAAGACAACTAATCGTGGAACAACGCAAACTTGCCTCAGTATTAAACAGTGACAGAGTAGTAACTAGTTGGACATGTTTGAAGCATATGGTCAACCAACAGTTAAGGTACATGTCAATAACTATTGTGACTATTATAACTATTATTTATATGAATCCCTATATACACACATGTTCTCAAGACCATGTCGCAGTAGCGTTTTTACTTATAAAAATAAAGGTTGGTCTTTCCTTTTTTCTGGTTTGCTCAATTTCATGGCTTTCTGTTTGAACATTAAGACATATCTACATTTGGTCTTCCTCAATCACTTTCCTCCCAGCTCATGTGCCAGTGTTTCAAAGACTACCTCGGGGTACCTGTTGCTGTCATTAAACAAATGCAGCCCCCTTCAATTTGAGTACAAAAGAAAAGTTCACAAAGTTTATTTTAATGATTCCCGGCATTTTTAAGTTAATGGAACAAAAAGTTTAATGTAAACTTTTAGGTTTGGAGAATAGAACTGTTTAGCGTATGAGGGCATGTAGCTCCCACATTTTGGCCCATAATAAAATCAGGATTAGCACCACAAACGGTAGATTCCCAAACAGCTGGCGTCAATCCAAACCTGTTACACCTGATGCTTAGGCACTACAGCTGAGACGTGTCAGCATAGCATCTAGGGTCAGCTTTCTGCTTAGCGACAAGCAAGATGACGGCGGTCAACAATATTTCACTGAACACAGAAAAGAAATTCTTCCAGTTAATGGTTTCTAAAATCTAATGCACTGCGGCTGTTACTGtaacaccaaaaacaaaacgCACATTACTCCTTAATACTGTGTGCAGTCCCGTCTTTCCTGCTCACTGTAACTTCGATTCTCACACATTAACACCAGTGCGAGTGTTAACAATGGTGTTAATTTGATAGTTTGAATGTTTCCCCCGTGGTAGCACACCTTACAGTCTGAACTGAGCGGTTATAATAAAGATGAAttcatatttggaagaaaatgaATTTGATTAAATCCATTaagcatttgtaaaaaaaaatgtcatcataCTTGAGAGTGAGGGAAGGGGACACTTTTCTCCAGAAATGGTTGCCTCATTTCAGAACAGAACTCCGTCAGTTCACAGACTCGTGTCTTATTGAAGCCTTGCTTCACATAGCCTGACGGTTCTCGTACAACCAGGCTTTTACTGGGACTACAGCTAATATATGGAGATAAAACAGGGCATGGTCAAAGTAAAGGAAACACCCTgtacacgttttttttttttcacatgcagtcaaacaaaaaaagcagaacatAAGAGTGAGATGTaagaaaaatctttttaaatcacaaacattTTCAAGGTAAACAGAAAAATGACCatacaattccaacaattcacTCCAGATGCAGTTGGTCACTACAAAGCAGATATAACTAAATCTGTCTATGGACTGCTTGTGTGAAGAATATTATTACTGGAATTTTCAGTAGCAACATTTGCATGAGAAGATACTGTATAAGTAATTTTCAACTCAAAAGCAAGCAGCTAGCCTTCTAAAGACTTGGTGGAAACACGTTGGCTATGGTTTCTCTGTTAGATAACAGGACACAACAGTGTTCCAATCGTCAGTGGGAAAATGTcagggaatatatatatatacatatatatattttttaaatctgtcgTAATGTTGAGCAAGTAGTACTGAATATATCAAATTGTTAACACCCTAAAAAACTATATAAGGTGTGAATATACAGAAAAGTGATGTGACAATGCTAATAGCCAAAGACCCAAATATGTTTTGTGTATCTGTGCGGGACAGCAAGGGTACAATATTCTGCTGTTTCCAGTCTATTTTCTGTGGAGGTCACGATCCAGTTTTGAGtccctctgtcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactatctgtATCCCTTTGCTACCAAGTACAAATCAGTCACCTGCATATGGATCTACACAGACATACTGTTGTAagtaaatgcagatatatacaGTGGGAGTGAATCTTGTGTTCGCTACAATCTCTTCATGGATAGCAGCGCCACTGTTCAGCAAGCTGGCTGGCTTCATAATAAAcctatacaaaaaaaagtcagattccAACAAAATGATTGGTTCTTAAGCAAAAGCTGAAAATCCTTTGTACTTCACTCCTCTATCGTGCTCCATTGttccttttgtttgtttccttCATTTCTGCTCTGTGCTCGTTCTATTCGTCCATTATTCTCCCAATTAAAAGTTTTGATTCGCTTCTTCATTGTTAGAGGCTCACTCGTCCATTATCCCCGGCAGACTgtaagcagagagagagagaagaaaaaaaaaagaagagagatgaGGAAAGAGGGAAGACAAAAGGAAGTAGAGAATAGAGAGAGCACGGGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309302 True 2726 lncRNA 0.38 3 15054705 15057478

Neighbor

gene id symbol gene type direction distance location
LOC120553461 NA coding upstream 300455 14750780 ~ 14754250 (+)
lmod2b lmod2 coding upstream 633746 14413543 ~ 14420959 (+)
asb15b LOC103373124 coding upstream 641690 14397723 ~ 14413015 (+)
ints13 asun coding upstream 680051 14367920 ~ 14374654 (+)
LOC120553477 NA coding upstream 887109 14160077 ~ 14167596 (+)
fgl2a fgl2 coding downstream 188680 15246158 ~ 15256323 (+)
LOC120553796 LOC104934096,LOC103355199 coding downstream 281361 15338839 ~ 15345725 (+)
pus7l pus7l coding downstream 303451 15360929 ~ 15368119 (+)
zcrb1 zcrb1 coding downstream 433805 15491283 ~ 15493423 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding downstream 454371 15511849 ~ 15521235 (+)
G227950 NA non-coding upstream 258601 14793781 ~ 14796104 (+)
G227949 NA non-coding upstream 279885 14774313 ~ 14774820 (+)
G227948 NA non-coding upstream 284458 14769977 ~ 14770247 (+)
LOC120553441 NA non-coding upstream 507278 14500801 ~ 14547427 (+)
G227935 NA non-coding upstream 532945 14521104 ~ 14521760 (+)
G227972 znf800,LOC102791911 non-coding downstream 2526 15060004 ~ 15060834 (+)
G227969 NA non-coding downstream 83734 15141212 ~ 15145198 (+)
G227995 nampt,LOC102790888 non-coding downstream 96651 15154129 ~ 15166209 (+)
G228065 NA non-coding downstream 232709 15290187 ~ 15290508 (+)
G228119 NA non-coding downstream 473653 15531131 ~ 15531439 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 592231 14454593 ~ 14462474 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 1049800 14002132 ~ 14004905 (+)
trnal-caa_22 NA other upstream 1252502 13802093 ~ 13802203 (+)
trnal-caa_21 NA other upstream 1252945 13801648 ~ 13801760 (+)
trnak-cuu_12 NA other upstream 1279646 13774987 ~ 13775059 (+)
LOC120553256 gsap,LOC102790605 other downstream 111126 15168604 ~ 15203041 (+)
lrrc17 LOC103355197,LOC103382847 other downstream 243044 15300522 ~ 15331178 (+)
prickle1b prickle1 other downstream 384507 15441985 ~ 15471887 (+)
yaf2 yaf2,LOC102236902 other downstream 437199 15494677 ~ 15511178 (+)
tmem168a LOC103368481 other downstream 1209658 16267136 ~ 16280061 (+)

Expression


Co-expression Network