G227972 (znf800,LOC102791911)


Basic Information

Item Value
gene id G227972
gene name znf800,LOC102791911
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15060004 ~ 15060834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309304
GGGCTGACTCTGTTGTTTGGACTGGTTTTGGTTGGAATGTGTTGTTTTAGAGGTCACAGGGGTGGACTTGGAGTTGTGGCCACGTGTTGGAGAGGCATTGTTGCTCTTCCTGGGGGGGGTGACCTCCAGAGAGAAGGGCAGGCCAGGCCGTGAGGCGATGCTGGGTGTGATGGTGTCCCGTCGTAGACCACGATGCACCTCGTCAAAATGGCGGCGTACATTGGCTTTGGTAGCGAAGGTTTTGAGGCACACTGGGCAGGATTTTCCAGTAGGTGTGCTGAGAGTCCTTGGCCGACCtccagCTTTCACCATAGAGAGTAGGCTTGTGGGAACTGTACGCGTCTCTGTGAACTTTCGGAGCTCTTCGAGTTTGGTCTGGTGCATTTTGCGGCAGTGGCGTCTGATGCTGCGGCGTGAGTTAAAGTCCTGACCGCAGAGACAACAAGAGATTGTCACATCCTCAACCTGGATGGGAGGG

Function

symbol description
znf800 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus.

NR:

description
PREDICTED: zinc finger protein 800 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309304 True 478 lncRNA 0.55 2 15060004 15060834

Neighbor

gene id symbol gene type direction distance location
LOC120553461 NA coding upstream 305754 14750780 ~ 14754250 (+)
lmod2b lmod2 coding upstream 639045 14413543 ~ 14420959 (+)
asb15b LOC103373124 coding upstream 646989 14397723 ~ 14413015 (+)
ints13 asun coding upstream 685350 14367920 ~ 14374654 (+)
LOC120553477 NA coding upstream 892408 14160077 ~ 14167596 (+)
fgl2a fgl2 coding downstream 185324 15246158 ~ 15256323 (+)
LOC120553796 LOC104934096,LOC103355199 coding downstream 278005 15338839 ~ 15345725 (+)
pus7l pus7l coding downstream 300095 15360929 ~ 15368119 (+)
zcrb1 zcrb1 coding downstream 430449 15491283 ~ 15493423 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding downstream 451015 15511849 ~ 15521235 (+)
G227970 NA non-coding upstream 2526 15054705 ~ 15057478 (+)
G227950 NA non-coding upstream 263900 14793781 ~ 14796104 (+)
G227949 NA non-coding upstream 285184 14774313 ~ 14774820 (+)
G227948 NA non-coding upstream 289757 14769977 ~ 14770247 (+)
LOC120553441 NA non-coding upstream 512577 14500801 ~ 14547427 (+)
G227969 NA non-coding downstream 80378 15141212 ~ 15145198 (+)
G227995 nampt,LOC102790888 non-coding downstream 93295 15154129 ~ 15166209 (+)
G228065 NA non-coding downstream 229353 15290187 ~ 15290508 (+)
G228119 NA non-coding downstream 470297 15531131 ~ 15531439 (+)
G228128 cntn1 non-coding downstream 616521 15677355 ~ 15680269 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 597530 14454593 ~ 14462474 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 1055099 14002132 ~ 14004905 (+)
trnal-caa_22 NA other upstream 1257801 13802093 ~ 13802203 (+)
trnal-caa_21 NA other upstream 1258244 13801648 ~ 13801760 (+)
trnak-cuu_12 NA other upstream 1284945 13774987 ~ 13775059 (+)
LOC120553256 gsap,LOC102790605 other downstream 107770 15168604 ~ 15203041 (+)
lrrc17 LOC103355197,LOC103382847 other downstream 239688 15300522 ~ 15331178 (+)
prickle1b prickle1 other downstream 381151 15441985 ~ 15471887 (+)
yaf2 yaf2,LOC102236902 other downstream 433843 15494677 ~ 15511178 (+)
tmem168a LOC103368481 other downstream 1206302 16267136 ~ 16280061 (+)

Expression


Co-expression Network