lrrc17 (LOC103355197,LOC103382847)


Basic Information

Item Value
gene id lrrc17
gene name LOC103355197,LOC103382847
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15300522 ~ 15331178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309418
agagatagaggttGCAGAAGCAGCCAGTCACTCGTCCCTCACTCCAGGCTCTAAATTTATAGGCAGCCAGGCAGATTTTCTTGGCTTAGACGCAGCGCTCATGACAGGATTAGGAGCCGGGGACGCGGGACCAACCGGAGATCTGCAGGTCCTATTGGACGAGCCCGGGCCAGATTCTCTTCCTGCACAGGTGCATTCGCAGGCCTGCTGTACCTCCGTGAGCTTGACCTGTCCAACAACAGCCTCCATTACTTCCAGTACGGCGTACTCGAGGACCTCTACTTCCTACGGAAGCTCTCGCTGGAGAACAACCCCTGGATCTGCGACTACAACATCCACTACCTGATCTACTGGCTCAAGCACCACCCCGGCGTCTTCTACACTGGCCTGATCTGCTCCGAGCCACAGGAGTTCAGGGGCTGGCGCGTCGAGGATTATGTCAAGACCTACAATGGGGAATGTCCCATGGATAAACAAACTGGAGGGATGGATACAGGACAGGGGGGACAAGGGGGGACAGACAATGAGGCACTGGAGTTGGTGGCGGATATGGGTGATAGGCAGGGTGAGCGTTTACCTCGGCCCCTGAAAGAGAAGAAGCCCAACAGGTTTGAGATCATCAGGCTGAGTTAGAACGGAGGTGGATCAGATCAGACTGGTGTGGTTTAGTATGCAGGTCTGTGGAGAGGCTGAACAATGGATTAATAAAAGGTAGACTCAGTGATctgatgtttaaataaaaaatgtgatatgcataaaagtacaattttgggggaaaaaatcgttTGTCTTTTTAGTAATCAACATTTTCCATCTTGTGTGGgtaacaggaaaaaaaactcattttggGACATTTTTTGAAAAGATTATTCATTTGAATTTCATATTGTTTGGACATGTTTTGGAGATGCCATTtgagcttttgtttttttgttttgcaaccCATGTCTCTTTGAATTTCCCAAACAATCAACTGCAGGTGctcttatttttttctgttacagCCATTTTGATATAAGTTCAggatatacttttttttcttctaaagagtagtttggggcttttttgtattaatacatGTAC
>XM_039792208.1
ggagagagagagagagagatagaggttGCAGAAGCAGCCAGTCACTCGTCCCTCACTCCAGGCTCTAAATTTATAGGCAGCCAGGCAGATTTTCTTGGCTTAGACGCAGCGCTCATGACAGGATTAGGAGCCGGGGACGCGGGACCAACCGGAGATCTGCAGGTCCTATTGGACGAGCCCGGGCCAGATTCTCTTCCTGCACAGCTGTGACCGGCCTCCCGTGTCCCGTCACACCAATCTTCCTACAACAGTCTTCCAAGGTTGACCTGATTACTGAGAggcctcccttcctctcccctCCCATCATGCATCTCCTCACCCCCATTCTCCTCTTGCTGCTCCTCCGATCAGCTGAGGCCCGGAGAGGCCCTCGGTCGGGGACTGTGGAGAGGGGCGCTGGGGGCCGTGTACGGGGCAGAGGCAGGGCCGGAGTGATGAGACGTCAAACTCAGGAGTGTAAGGAATACATGGAGGCAGGAGAGAAGTACCTGGACTGCCAGGACAGGCAGCTGACCACCGTGATGCAAGACTGGCCTAAAGATATTCACCACCTGCTGTTGGCAAGAAATAAGATTCAGGTTTTGAGGGACAACATGTTTTCCCAGTTCACCCAGCTGAAGAGCCTGGACCTCCAGCAGAACGACATCTCCATGGTGGAGGACGGGGCGTTCAGTGGCCTCTCCCAGCTCACCACCCTGCTCCTCCAGCACAATGGACTGAAAACTGCCACCGAGGAGGTCCTGCTCCCTATGCCCCGCCTCGTCTACCTCCGTCTCTATGACAACCCCTGGAGCTGCCACTGCCAATTGGACAGCCTGGTCAGGACCCTTCAGGTGCCTAGCAACCGCAACCTGGGCAACTACGGCAAGTGCGCGGAGCCCCAGTCGCTGAGGGGCCAGAAGCTGAGGAAGCTGAATGTGGACTCATTGTGTGCAAAAGACCAACAGGTGGACAGGAGGCCAGGGGGCAGAGAGGTGGGGCAGCCTCCTCCAATCAAAGTAAAGACAGAGGCCACGTCCATGTGCCACACCTACATATTCCCAAAACCTCTGCTGGACTGCAGCAACAAAGATTTGAATGACATGCCGTCTGACCTGCCATCTGACATAGTAAAAATGGATCTGTCCTGGAACACCATCAAACATCTCAGGCCCAAACAGTTCCTGCTGTCCAAAGACCTCAAAATGCTCAACCTTAGCGGCAACAGCCTGCAACATATAGACACAGGTGCATTCGCAGGCCTGCTGTACCTCCGTGAGCTTGACCTGTCCAACAACAGCCTCCATTACTTCCAGTACGGCGTACTCGAGGACCTCTACTTCCTACGGAAGCTCTCGCTGGAGAACAACCCCTGGATCTGCGACTACAACATCCACTACCTGATCTACTGGCTCAAGCACCACCCCGGCGTCTTCTACACTGGCCTGATCTGCTCCGAGCCACAGGAGTTCAGGGGCTGGCGCGTCGAGGATTATGTCAAGACCTACAATGGGGAATGTCCCATGGATAAACAAACTGGAGGGATGGATACAGGACAGGGGGGACAAGGGGGGACAGACAATGAGGCACTGGAGTTGGTGGCGGATATGGGTGATAGGCAGGGTGAGCGTTTACCTCGGCCCCTGAAAGAGAAGAAGCCCAACAGGTTTGAGATCATCAGGCTGAGTTAGAACGGAGGTGGATCAGATCAGACTGGTGTGGTTTAGTATGCAGGTCTGTGGAGAGGCTGAACAATGGATTAATAAAAGGTAGACTCAGTGATctgatgtttaaataaaaaatgtgatatgcataaaagtacaattttgggggaaaaaatcgttTGTCTTTTTAGTAATCAACATTTTCCATCTTGTGTGGgtaacaggaaaaaaaactcattttggGACATTTTTTGAAAAGATTATTCATTTGAATTTCATATTGTTTGGACATGTTTTGGAGATGCCATTtgagcttttgtttttttgttttgcaaccCATGTCTCTTTGAATTTCCCAAACAATCAACTGCAGGTGctcttatttttttctgttacagCCATTTTGATATAAGTTCAggatatacttttttttcttctaaagagtagtttggggcttttttgtattaatacatGTACAACTTTGTTTACCTGTTTTCTAGAAATAAAATTGGTTTTATTTG

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 17-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU309418 False 1083 lncRNA 0.46 2 15300536 15331134
XM_039792208.1 True 2164 mRNA 0.51 5 15300522 15331178

Neighbor

gene id symbol gene type direction distance location
fgl2a fgl2 coding upstream 44199 15246158 ~ 15256323 (+)
LOC120553461 NA coding upstream 546272 14750780 ~ 14754250 (+)
lmod2b lmod2 coding upstream 879563 14413543 ~ 14420959 (+)
asb15b LOC103373124 coding upstream 887507 14397723 ~ 14413015 (+)
ints13 asun coding upstream 925868 14367920 ~ 14374654 (+)
LOC120553796 LOC104934096,LOC103355199 coding downstream 7661 15338839 ~ 15345725 (+)
pus7l pus7l coding downstream 29751 15360929 ~ 15368119 (+)
zcrb1 zcrb1 coding downstream 160105 15491283 ~ 15493423 (+)
gxylt1b gxylt1,LOC103355206,LOC103459445 coding downstream 180671 15511849 ~ 15521235 (+)
akap14 NA coding downstream 428133 15759311 ~ 15759832 (+)
G228065 NA non-coding upstream 10014 15290187 ~ 15290508 (+)
G227995 nampt,LOC102790888 non-coding upstream 134313 15154129 ~ 15166209 (+)
G227969 NA non-coding upstream 155324 15141212 ~ 15145198 (+)
G227972 znf800,LOC102791911 non-coding upstream 239688 15060004 ~ 15060834 (+)
G227970 NA non-coding upstream 243044 15054705 ~ 15057478 (+)
G228119 NA non-coding downstream 199953 15531131 ~ 15531439 (+)
G228128 cntn1 non-coding downstream 346177 15677355 ~ 15680269 (+)
G228130 NA non-coding downstream 349195 15680373 ~ 15681491 (+)
G228136 NA non-coding downstream 358730 15689908 ~ 15699902 (+)
LOC120553205 NA non-coding downstream 390346 15721524 ~ 15722242 (+)
LOC120553256 gsap,LOC102790605 other upstream 97481 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 838048 14454593 ~ 14462474 (+)
LOC120553485 tmem60,LOC101486292,LOC104924613,LOC103382814,LOC100699021 other upstream 1295617 14002132 ~ 14004905 (+)
trnal-caa_22 NA other upstream 1498319 13802093 ~ 13802203 (+)
trnal-caa_21 NA other upstream 1498762 13801648 ~ 13801760 (+)
prickle1b prickle1 other downstream 110807 15441985 ~ 15471887 (+)
yaf2 yaf2,LOC102236902 other downstream 163499 15494677 ~ 15511178 (+)
tmem168a LOC103368481 other downstream 935958 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1439880 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1535132 16866310 ~ 16867796 (+)

Expression


Co-expression Network