G228128 (cntn1)


Basic Information

Item Value
gene id G228128
gene name cntn1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15677355 ~ 15680269 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309509
GTGGCCTCTTTGTGAACATCTCACAGTGTTCACCAGGGGGTCCGAGGCCGGCTCCATTGAAGGCACGGACCTCAATGAGGTAGTGCGAGTCTGGCAGCATGTTCTCCAACCTGGTCTGGTTGACTGTGGCTGAAACAAATATACGGTTTGCTCCCGGCTCTGGATCATCATATTTCCTCCAGTATTTGACCTGGTATCCCTCAATGTACTGCTGCAGGCCTGTACCAGTGTCGACCACAGGCAACCACCAGACCAGAGCTTCAGTGGAGGACACCGGTCTGGCATAGACGTCTGTCGGAGACTCCACAGGTACATCTCTTGGGTAGTAGATGACCTTGGTGAGGCTGTATGGTCCGTCTCCTTTGACATTAAACGACTTGATCTTCACCTGAAACTCCCTGACCTGGAAATCTTCATCAGTGGGAATGAAGTAGGAGTCCCTGTGAACGTAACGCCTCGTTTCGGGGTCCGAAATGGTCTCGTACCACCAGTCGTAAGCATCGTGAGGCTTAAATGCCACAATGTAGCCAAACTTTTTTCCGTAGAAATACCACGGCTGCACGGGCTAAAGGGTCAAGAgtggtaaagtaaaaaaaaaaaaa

Function

symbol description
cntn1 Predicted to enable carbohydrate binding activity. Predicted to be involved in Notch signaling pathway; cell adhesion; and positive regulation of peptidyl-tyrosine phosphorylation. Predicted to act upstream of or within several processes, including nervous system development; positive regulation of neuron projection development; and positive regulation of sodium ion transport. Located in extracellular exosome. Implicated in Compton-North congenital myopathy.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: contactin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309509 True 602 lncRNA 0.50 3 15677355 15680269

Neighbor

gene id symbol gene type direction distance location
gxylt1b gxylt1,LOC103355206,LOC103459445 coding upstream 156120 15511849 ~ 15521235 (+)
zcrb1 zcrb1 coding upstream 183932 15491283 ~ 15493423 (+)
pus7l pus7l coding upstream 309236 15360929 ~ 15368119 (+)
LOC120553796 LOC104934096,LOC103355199 coding upstream 331630 15338839 ~ 15345725 (+)
fgl2a fgl2 coding upstream 421032 15246158 ~ 15256323 (+)
akap14 NA coding downstream 79042 15759311 ~ 15759832 (+)
avpr2l LOC103369361,LOC104965399,LOC107098425 coding downstream 82524 15762793 ~ 15764738 (+)
LOC120553452 NA coding downstream 89743 15770012 ~ 15772705 (+)
LOC120553449 LOC102291490,LOC101477496,LOC100701114,LOC102193524 coding downstream 96646 15776915 ~ 15789611 (+)
tfec tfec coding downstream 144075 15824344 ~ 15852844 (+)
G228119 NA non-coding upstream 145916 15531131 ~ 15531439 (+)
G228065 NA non-coding upstream 386847 15290187 ~ 15290508 (+)
G227995 nampt,LOC102790888 non-coding upstream 511146 15154129 ~ 15166209 (+)
G227969 NA non-coding upstream 532157 15141212 ~ 15145198 (+)
G227972 znf800,LOC102791911 non-coding upstream 616521 15060004 ~ 15060834 (+)
G228130 NA non-coding downstream 104 15680373 ~ 15681491 (+)
G228136 NA non-coding downstream 9639 15689908 ~ 15699902 (+)
LOC120553205 NA non-coding downstream 41255 15721524 ~ 15722242 (+)
G228164 NA non-coding downstream 112572 15792841 ~ 15794807 (+)
G228171 NA non-coding downstream 224792 15905061 ~ 15905664 (+)
yaf2 yaf2,LOC102236902 other upstream 166177 15494677 ~ 15511178 (+)
prickle1b prickle1 other upstream 205468 15441985 ~ 15471887 (+)
lrrc17 LOC103355197,LOC103382847 other upstream 346177 15300522 ~ 15331178 (+)
LOC120553256 gsap,LOC102790605 other upstream 474314 15168604 ~ 15203041 (+)
LOC120553353 spam1,LOC103370765,LOC102199515,LOC101470336,LOC102310263 other upstream 1214881 14454593 ~ 14462474 (+)
tmem168a LOC103368481 other downstream 586867 16267136 ~ 16280061 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other downstream 1090789 16771058 ~ 16831243 (+)
stmp1 NA other downstream 1186041 16866310 ~ 16867796 (+)
morn2 morn2 other downstream 1200007 16880276 ~ 16916928 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other downstream 1239394 16919663 ~ 16922823 (+)

Expression


Co-expression Network