G228328 (strip2)


Basic Information

Item Value
gene id G228328
gene name strip2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16882838 ~ 16887563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309795
ACTCTGATATTGTACTTTGTAATTCTATTGAATAATGCCTTTATGGATCTGTAATTGCACATACCTCTGAACAAATTCAGTAATGAGGATTTATCTAGACTATACAGATATGGAAATGTGTGTAACAAACATATATACCGTTAGAACACCCATACAATGCTAAACACTTCTGGTAAAATACTGTACCAGATACATGAAACAGCTATTTTCATTGATTGTACATTTTTCAGGtagaaaataacatttttgtaTTGCAAACCTTGAGTGGTGATTTCAATGAAAAACCATACATTTTGATCATGAAGGCAACAACAATGAAATAATGGCACTCAAATTTggcacaaaatacaaaaaatacatctgAACTTGAAATGTCACTGACATAAATACAAACTCACAATTAATTATTGTGTTTGGTGAAAATGTGCAGCCTATGCAGTCAAAGTGCTTTAGGTGTTATTTTCTTATATGAACGTGATGATAAATGTGTATTCATCACTACAGGTAGTGAGCTAGATGATGGCAAGGAAGCTTTAAAACTTTTGCAATATATTATCTCCATAAACCTGAGAATCTATAAAGTTTACAATACTATTTTTGAAAGATTTCGCCTtcctgaagaagaaaaaacatccaCTGTAATGCAGAACACAGACATTGAGAGGAAAAGTACACTTCTAATTGCGCTGGAAACATaagtagacaaaaaaaaaaagccattccAAATACCATATTTAAATGTGAACAGGTACTCAAAACAAAACAGTGGCCATGCACATTTCAACAGAGAAGCACAAGACTCAGTGTCAAAATTATTGTTCTATACAGAAATAATAAATGACTGAGCTTGACCCCTCGAGGCATGTAGATAACAAAACCCCAGCGAGAATGATACGAAAGAAAGGTGAACATgcttctttttgttttctgtgcttgttCTTGTGCTTCATTTCCAGGAAACAATCCTGAGCTCTCAACTCTGGAGCCCCGCTTAGGTAGTTAGTAACGGAAGTGAAGGAACGGATCAGGTACAGTGAAGACGAATAAGAAAAACAGCACCATTGTGTGACAGCTGTGTTCTTCCAAGCAAGGGTGGCAAAGTGCTCACCAAGGCCAACACCAAGGAGGACAGTGGTTTACATGTGTGCTGTTGGGGAGTCACAATTGTTAGTTATTCTGATCATTGCTGAGGTTCCATTATCCCAGGACGGTTCCATAGAAAACTTCTGGGAAGTGGCTGTTTCTCCGAATGGCCACATGGGGCAACAATGAGCCCATTCCACACTCGGAAACTACATAGGTGAGATTTGTGCTTTATTGGGAAGTTTTTATAAACAGTATTTTAGATTTTGAAAGAGAAAATTATTCACGGGAGAagacagagatttttttttggtcaaattTACAGCTGGTTAACCAACCCACCTCTGTTAAAGAGCTGCACACAGCCCCCTCCCTGAGCTTTTCTATGGGGCCATTACAGGCTTTAGGTTCGATATGTGATAACATGAACAAATCCTGGATGACATCAGTAATTACAGATTTGGTTCTGTGATTTCTGGATTTCAAATTCAAAGGATGCCAATGTTTTACACACCAGGAATAGAAAGGACTCTGTACAAGGTTACGTTTCTATTTTTAAAGAGAACAAATAGGATACAGTTTCTTCCAGAAGATCCGGTTTGTTTCTTACACCAAACCATCCTCCACACATCTGCCCATTTTCATGtgctgtttttttcctttctgcgCACACATACTTTTTAcgttcacaaacaaaaaaaacatacacttaCAGCtggtatatttcttttttttggtgaCATTATACTAGATCATTATGCCATTAGTAGAAATAGGTCCCACTTCTACATTTGGACTATCAAAATTACCCTGTGGTTTGCTtccaaaaaggccttttttccTAGAAAATACATAAGAAAAACTTTCATCAATCCATCACCCACAAACTACAACCCGATGACTACAGTAggctttgtgtaaaaaaaaaaaaaagaactgattAGAAATCATGTACATctcaattgaaaaaaaatatatatcagaaAATGTTTAACCACATACATTGGTACAAATAAATAGGAAAACATTACTAAGGAGTCAAAAAAGcaccaacatttaaaaaaggggACATATAAATTGACAATGTGGTGAagatatttttttgggggggggcagTATAACTGGCCGAAACAGTCTCCTGCTACAGCGGTTTCTTATTAACTGCTACCTCTGTTCTTGCCTGTCACGTCCATGTGGGTTCACAGTAGTCATAGGCACATGTTAACGtcaagtgtgcgtgtgtgtgtgtgacatctaTTTGTGACGAGCTCATAGCAAGAAGCTCCATTTGTTCGTCAAATTTGCTTCATTTTACCCTTCATCTTCCATCTTCTTCCATCACTAGATAGCCTGGGAGGTGGCTTCTCCATCTCCAGCTTCTTTCTCTTCACTCTCCCCCATCCCTCCCTCACTGATGTGAAATATAACCCCCATTCCTTCCACCTCCTCTCCTCGCTCTCTCCAaccttctccctcccctccatcACGGATTCTGCAGCAGCCCCTCCCACTGGATGGGCTGGGAGAAGACCTCTCTCTCCAGCCACATCTCGTAGCTGTAGTGGAAGTCCTCGGGCAGCTCCACGCGCTGACCCAGCACGCTCTGCAGGCAGTTGTCCACCGGCGCAAAGTCTCCGTTCTTGTTCTTGTCGTAGCGGCGGCTGTTGAACTTCTCGATGCTCTCCCGCAGGGCGCACTCCTCCGCCTGGAAGTCCCAGGGGCGTGCGTCGATATCTTTCCGTAGGCCCAGTCGTCATTGAGCCTGTGGCGGACCTTCTGGTAGATGGCTGACATGGTCTTCATGTTGCTCTTCCTCCACTGGCGGCCCAGGTACTTGGTCTGGATCTTAAGCAGCTTGAGCACGTAGAGCTGCATCATGGCCTGCTTCACCTTCAGAGCTCTCTTCAGGATGGGGGCAGACTTGAACACCACCAGCATCTGAAAAAGGATTACAATTGACTAGAGGAGAATGTTTAAGCATGCGGTGGTCCATGAAGACCTTCACCGTGTAATAGACAATGAACATGGACTGGCTGACTGATTTGTACCAGATCATAATGggacaatttattttaaattttctttacatttttccaagggctcCCTGCCCTGCTGGGCCCCTGGGTGTGCACTCAGATGTTGACG

Function

symbol description
strip2 Acts upstream of or within regulation of cardiac muscle contraction. Predicted to be active in cytosol. Orthologous to human STRIP2 (striatin interacting protein 2).

NR:

description
PREDICTED: striatin-interacting protein 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309795 True 3228 lncRNA 0.41 2 16882838 16887563

Neighbor

gene id symbol gene type direction distance location
tnnt2e NA coding upstream 27964 16833664 ~ 16854874 (+)
dock4b NA coding upstream 409165 16358792 ~ 16473673 (+)
gpr85 gpr85,LOC106576049 coding upstream 662253 16216041 ~ 16220585 (+)
LOC120553010 NA coding upstream 668961 16213082 ~ 16213877 (+)
ppp1r3aa NA coding upstream 706677 16163395 ~ 16176161 (+)
LOC120553739 ascl4,LOC103372058 coding downstream 92443 16980006 ~ 16980757 (+)
cdkn1d NA coding downstream 113382 17000945 ~ 17005314 (+)
LOC120553296 LOC103372063 coding downstream 134329 17021892 ~ 17032722 (+)
wnt7ba wnt7b,LOC106575957 coding downstream 300623 17188186 ~ 17196857 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding downstream 346449 17234012 ~ 17237437 (+)
G228272 NA non-coding upstream 50717 16831604 ~ 16832121 (+)
LOC120553146 NA non-coding upstream 121677 16477197 ~ 16761161 (+)
G228276 NA non-coding upstream 270133 16612502 ~ 16612705 (+)
G228275 NA non-coding upstream 316700 16565665 ~ 16566138 (+)
G228246 NA non-coding upstream 558281 16322118 ~ 16324557 (+)
G228326 LOC106583082,LOC106565661 non-coding downstream 29437 16917000 ~ 16919571 (+)
G228353 NA non-coding downstream 120239 17007802 ~ 17010730 (+)
G228354 NA non-coding downstream 126118 17013681 ~ 17014664 (+)
G228355 NA non-coding downstream 127515 17015078 ~ 17015306 (+)
G228356 NA non-coding downstream 129982 17017545 ~ 17017992 (+)
stmp1 NA other upstream 15042 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 51595 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 602777 16267136 ~ 16280061 (+)
yaf2 yaf2,LOC102236902 other upstream 1371660 15494677 ~ 15511178 (+)
prickle1b prickle1 other upstream 1410951 15441985 ~ 15471887 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other downstream 32100 16919663 ~ 16922823 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1642573 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1935269 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2465420 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2522927 19410490 ~ 19413704 (+)

Expression


Co-expression Network