G228384


Basic Information

Item Value
gene id G228384
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17137271 ~ 17138351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU309867
TTCTTATATTCTTCGTCTCCAGTCTTTATTTATTAATGAAACAGTACAAAGTTTACAAAGTACAAAGTCTTTTCTAGTCACAACGTTTCTAAAGCCAACTGCACATTCCATGTTATCTACACAGCACGAGTTACACTTCACAGTTAAAGTAAGGAATGTTGCTATGAAATGCATAATGTGATTTGGCGCCACTCACCCATTTGAAATCAAATGACAGCTCTTTGTTGTGCTCAGTGAATGGGAGTCTGTCAGTCAGGTGACAAAGACGTGTGTGCTCCTATGACGTATTGCTGCCCTCCAGGGAAGGCAGTAGGTTGTATAGTTAGCTCCTGATGGGGTAAAATCACAACCCTGAAACCACACAACCTACTACCTCACCCTGTACGAACACCATTGATCACTTATCACCTAGGTGGGCAGGAAGAACATCTGGATCTGAAGTTGTGTACACGTCTGGTCACTGTGTAAATGAAGACACAACTACTGTGTTGCTATTACGTCAATACAGCAAGGTAAGTGATGATAACATTAGAGTTAAAATGATACAGTTAGATAAGAGTAAAACCATTACTCAAATATCAGCTAACGGAGGCATTTTGTTAAAGCATTTGCAATTATAATAAGCATACTTGAAGTAACAGACTCCTAAACTTGCATTTTAATAACCAAAAAAACCTACAAAAATTTCAGATATCTTTATTTCAGAAAAACACTCTAATGAATGTCAGGTAATCAAAACAGATACACACTGACTGTACACTACAAGATATGAGGAAAATCTTCCACACAACAAGTTGCAGTACCTATTTTATACCTATATCCCACTTATATTATCTAACATCTCCAACATTGCTCTCTAATTTAACAGCATCTCTCTCTAATGTTCCTTCTCTaacattacatatatatatatatatatataaaataatttgcAGTGGTGAAGTTGTATTTTCCTTTGTGACAACGccgatgatgataatgatgatgccGCCATCACAGTCGCTTCAGGAAAGACAGTAAGTTGTATAGTCATCTGACAGCTTGGGAATGACCCTAAAACTATACAACCTACTACCTCACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309867 True 1081 lncRNA 0.37 1 17137271 17138351

Neighbor

gene id symbol gene type direction distance location
LOC120553296 LOC103372063 coding upstream 104549 17021892 ~ 17032722 (+)
cdkn1d NA coding upstream 131957 17000945 ~ 17005314 (+)
LOC120553739 ascl4,LOC103372058 coding upstream 156514 16980006 ~ 16980757 (+)
tnnt2e NA coding upstream 282397 16833664 ~ 16854874 (+)
dock4b NA coding upstream 663598 16358792 ~ 16473673 (+)
wnt7ba wnt7b,LOC106575957 coding downstream 49835 17188186 ~ 17196857 (+)
LOC120553078 LOC104966316,LOC103366982,LOC104933494 coding downstream 95661 17234012 ~ 17237437 (+)
kdm5a NA coding downstream 99584 17237935 ~ 17260868 (+)
LOC120553077 LOC107383981,LOC106521814 coding downstream 124295 17262646 ~ 17275457 (+)
LOC120553489 usp15 coding downstream 137662 17276013 ~ 17297654 (+)
LOC120553376 NA non-coding upstream 16687 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 21928 17113825 ~ 17115343 (+)
G228374 NA non-coding upstream 24848 17109768 ~ 17112423 (+)
G228356 NA non-coding upstream 119279 17017545 ~ 17017992 (+)
G228355 NA non-coding upstream 121965 17015078 ~ 17015306 (+)
G228392 NA non-coding downstream 49575 17187926 ~ 17205640 (+)
LOC120553531 NA non-coding downstream 161372 17299723 ~ 17301020 (+)
LOC120553790 NA non-coding downstream 463841 17602192 ~ 17800250 (+)
G228571 NA non-coding downstream 1224899 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 1290774 18429125 ~ 18465053 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 214448 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 220343 16880276 ~ 16916928 (+)
stmp1 NA other upstream 269475 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 306028 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 857210 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 1391785 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1684481 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 2214632 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 2272139 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 2493586 19631937 ~ 19839382 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023777 CR354430.1 non-coding NC_007136.7 CM002909.2 2192682 ~ 2192775 (+)
grasscarp (Ctenopharyngodon idella) G110723 NA non-coding CI01000020 null 754453 ~ 788626 (+)
grasscarp (Ctenopharyngodon idella) G215653 NA non-coding CI01000050 null 5909722 ~ 5909955 (+)