Gene
RNA
| Item | Value |
|---|---|
| gene id | G228439 |
| gene name | kdm5a |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 17243465 ~ 17243980 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| kdm5a | Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A). |
| description |
|---|
| PREDICTED: lysine-specific demethylase 5A isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU309936 | True | 411 | lncRNA | 0.51 | 2 | 17243465 | 17243980 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trim24 | LOC103366983 | coding | downstream | 8772 | 17222334 ~ 17234693 (-) |
| LOC120553673 | NA | coding | downstream | 23108 | 17208626 ~ 17220357 (-) |
| atxn10 | atxn10 | coding | downstream | 36011 | 17196941 ~ 17207454 (-) |
| pparaa | ppara | coding | downstream | 108335 | 17116753 ~ 17135130 (-) |
| cdpf1 | cdpf1 | coding | downstream | 127012 | 17114008 ~ 17116453 (-) |
| LOC120553454 | LOC104933464,LOC108241015,LOC102202158 | coding | upstream | 62243 | 17306223 ~ 17331378 (-) |
| creld2 | creld2 | coding | upstream | 321591 | 17565571 ~ 17570648 (-) |
| zbed4 | zbed4,LOC102794369 | coding | upstream | 332158 | 17576138 ~ 17583883 (-) |
| tbc1d22a | tbc1d22a,LOC106927306,LOC103356476 | coding | upstream | 890104 | 18134084 ~ 18270751 (-) |
| celsr1a | NA | coding | upstream | 1185127 | 18429107 ~ 18523877 (-) |
| G228423 | NA | non-coding | downstream | 21237 | 17221205 ~ 17222228 (-) |
| G228401 | NA | non-coding | downstream | 105190 | 17137270 ~ 17138275 (-) |
| G228363 | NA | non-coding | downstream | 236465 | 16952943 ~ 17007000 (-) |
| G228360 | NA | non-coding | downstream | 293659 | 16914607 ~ 16949806 (-) |
| G228295 | NA | non-coding | downstream | 412226 | 16824829 ~ 16831239 (-) |
| G228474 | NA | non-coding | upstream | 28968 | 17272948 ~ 17275477 (-) |
| LOC120552976 | NA | non-coding | upstream | 158268 | 17402248 ~ 17402832 (-) |
| G228522 | NA | non-coding | upstream | 273683 | 17517663 ~ 17600185 (-) |
| LOC120553191 | NA | non-coding | upstream | 1060605 | 18304585 ~ 18346997 (-) |
| G228684 | NA | non-coding | upstream | 1312073 | 18556053 ~ 18558509 (-) |
| slc37a3 | slc37a3 | other | downstream | 222730 | 17007724 ~ 17020735 (-) |
| G228291 | LOC103356441,LOC102298269,LOC102212027 | other | downstream | 420033 | 16748842 ~ 16823432 (-) |
| G228191 | NA | other | downstream | 1451612 | 15771238 ~ 15791853 (-) |
| znf800b | znf800,LOC103364713,LOC103355189,LOC108412280 | other | downstream | 2153482 | 15055475 ~ 15089983 (-) |
| grm8a | grm8 | other | downstream | 2190180 | 14634110 ~ 15053285 (-) |
| G228465 | NA | other | upstream | 51142 | 17295122 ~ 17302198 (-) |
| tafa5a | fam19a5,LOC103356475,LOC102793695 | other | upstream | 586636 | 17830616 ~ 18100995 (-) |
| gramd4a | gramd4,LOC103376144 | other | upstream | 1119279 | 18363259 ~ 18421407 (-) |
| LOC120553633 | slc2a13,LOC103369283 | other | upstream | 1494416 | 18738396 ~ 18823090 (-) |
| sox5 | sox5 | other | upstream | 1784629 | 19028609 ~ 19270336 (-) |
