LOC120553790


Basic Information

Item Value
gene id LOC120553790
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17602192 ~ 17800250 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU310024
TTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGACTTTGGGCTCAGGCTCTTCTTGGTTGATGCTCAAGAACACAAATTGCCTTTTTGTTCAAAAGGCAAAAGTTGAAATGTTTACATCCCTTGAAACTTATAACCTAatcattaaaggtgccctgccacacaaaatgttaggtccatatgtgtttgtgtcatgtggtgaatgtgaaaatgaactgctacctcctctgtcagctctagccacagaaaagaaataagcggagaaatcaggccaattacaaaagctggtcagtctgacatcatgttatctgagctcattactattcatgagcttgcccagttgcgctgggtaaaggatgctgatagccaggctctcattggctagctgttagccaattagagtcaagcagcttagctcattgaatattaatgagaactggcacaagtcgagctgagtcttcctgcaggctttctataccacgctagaatggcttgaaacaaggtaaccaaggcagtttttttacaaaaaattgTTACAgtgtccatggtagaacttcagacattaccacaaagtaatgaaatacgtgtggcagctattctcattttagtgacaagctgttcagctaacgttagtg
>TU310030
TTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTGCCTGGCTTACCTGTATCTCCAGCTTCATCAACCTCCTGATGAAACCCATACTGGCCCTTCTGCTGATAAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGTGGAAAGGTCCATACCTGCCATAGGTGCTGCTGCCAACCAAGGCAACCTTTGGGTTGATGGGAGAGCAGAATGGGTCGATGCTTCAAGGTCCAGGCCGGTTCCCCCAACTGACAACAAGGAAGTGAAAAGCGATGGTGAATGAGAAGATGGGTCTTCCTCTTCGTCCTTCTGCTGAGTGGGTTCGAGCACGTGACTTGTCGAGGCAGGCGTGCCAGATGTTCCTAGCGGCCCGGGCTTTCCAGGCGCTTTTGGGTTTCGAGGAGTTTCGGTTGCTCCAGGAAACGAGAACCTTCGTTTTCACGACACAGGCTGTGTCACTGACGGCCACGCCGTGACGTGGAAAAAGGTTCTTTAAAGAATGTTTCGCGCCACAAAGGAACGACCAGCACTAAGAACCGCTTAGTGCTTGGCAACAAACTAAGGTTAAAAAACTTTGTTTTCAACAAGAAGAACAAAAGAGGACAATTTCACTAGAACAAGGAGGGTGTTGTATCTGCTCCTATTGTGTTTCAATGTCCTGTTGACAGATACAGTACAAAGTGGGTcattgtaatgttgcatttgcTTTGGTTCATTTTAGGAGAAGATGTTATTGGAATACTAGTTGTTACACCTCAAACGTAAGATATAATGATAGCTAAACTCTCCcatatctatattattattattattataacaattGATTAAACCCCATGTAGTGTTTGAAAAACAATTGAAAGATCTTTAATTGCAAAGTGTGAAAGGTTTATTATCACATAACTCAGTGAGAGCCAGTAAGCTGCAATACTCTTTTGATAGATGAAGGTGATGAAATTGACGAATTGCTCAAAAAAGTCTACTTTCCccaatttacacaataaaatccCAAACTGAAGCATCAGTGGAGAACTCACGAAAAATCCCAAACTGTGCAGACAACTAGTGCAATGAAAACAAAGTCAGTAATTGGCCTTATGTGCCAGAACGCAATTTAAGCGAGTAATCAATGCATTCTCCGGTGATTAATCCGATTTCAATTACAAACGGCGATTATAAAATTGTTTAATTAGAATGGTCTTATTTCTGCAACTGAGGAAGACACAGAATATTGTTACACCCATAGTTATTCAACTGATTTAACTAGATATTCCCGATTTAAGGAAACAGCTAAATTTGTTGCAAAAAAACTATTAATGACCAATATTTACCAACCGGATTTAAACACACTTTCCTTTTGAGGCACCCTTTAAGTCCAGCTTCATGTACAAATAGGTTTTGAGTATAGGGTCCAAATAGCGTTGGCCCAAACAAATTGTTCAAATCCTTCCAAAGATCAAATATGCACTTACTTTGCAAAGGTGTTAGCCCAAGCTTTGATCAATATCCAGCCATGGTTTGGATACACGTCTATAGGGTCAGTTTAAGTGAAGGTGTATAACTGAACGGTGCTGTCATAGAGCAGACAAATGCCCCTACGTGACGGTATAGTATATGTGCCACCAATTTTAGTGCATGAGTAACATAATGTCTTCCACTGTTTCCAAGGAATAGGGAAAAGAGCGCATGAAGATTTGGGACATAGTGATAGTGTTTCAGTAATGAATGTTGTTCTAAAGTGATCCCAGTTACTGTAAATCTATTGTGAGTAGACAAAGCCTATTGCTGCATACTTTATGACAAGTCACACGGAAGATGCCATTGGGCCTATTTAATCCCTCATTAGAACGGTAGAGTCTGCTGAAATAGCTGCTCTGTATAACCTAATTCCCAAGTACAGGAGAGAGAGCTCTCACAGATGTAACAAATAGCTA
>XR_005638202.1
ATGAGGCGGCCATTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGACTTTGGGCTCAGGCTCTTCTTGGTTGATGCTCAAGAACACAAATTGCCTTTTTGTTCAAAAGGCAAAAGTTGAAATGTTTACATCCCTTGAAACTTATAACCTAatcattaaaggtgc
>XR_005638203.1
AATGAGGCGGCCATTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTGCCTGGCTTACCTGTATCTCCAGCTTCATCAACCTCCTGATGAAACCCATACTGGCCCTTCTGCTGATAAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGACTTTGGGCTCAGGCTCTTCTTGGTTGATGCTCAAGAACACAAATTGCCTTTTTGTTCAAAAGGCAAAAGTTGAAATGTTTACATCCCTTGAAACTTATAACCTAatcattaaaggtgc
>XR_005638204.1
ATGAGGCGGCCATTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGTGGAAAGGTCCATACCTGCCATAGGTGCTGCTGCCAACCAAGGCAACCTTTGGGTTGATGGGAGAGCAGAATGGGTCGATGCTTCAAGGTCCAGGCCGGTTCCCCCAACTGACAACAAGGAAGTGAAAAGCGATGGTGAATGAGAAGATGGGTCTTCCTCTTCGTCCTTCTGCTGAGTGGGTTCGAGCACGTGACTTGTCGAGGCAGGCGTGCCAGATGTTCCTAGCGGCCCGGGCTTTCCAGGCGCTTTTGGGTTTCGAGGAGTTTCGGTTGCTCCAGGAAACGAGAACCTTCGTTTTCACGACACAGGCTGTGTCACTGACGGCCACGCCGTGACGTGGAAAAAGGTTCTTTAAAGAATGTTTCGCGCCACAAAGGAACGACCAGCACTAAGAACCGCTTAGTGCTTGGCAACAAACTAAGGTTAAAAAACTTTGTTTTCAACAAGAAGAACAAAAGAGGACAATTTCACTAGAACAAGGAGGGTGTTGTATCTGCTCCTATTGTGTTTCAATGTCCTGTTGACAGATACAGTACAAAGTGGGTcattgtaatgttgcatttgcTTTGGTTCATTTTAGGAGAAGATGTTATTGGAATACTAGTTGTTACACCTCAAACGTAAGATATAATGATAGCTAAACTCTCCcatatctatattattattattattataacaattGATTAAACCCCATGTAGTGTTTGAAAAACAATTGAAAGATCTTTAATTGCAAAGTGTGAAAGGTTTATTATCACATAACTCAGTGAGAGCCAGTAAGCTGCAATACTCTTTTGATAGATGAAGGTGATGAAATTGACGAATTGCTCAAAAAAGTCTACTTTCCccaatttacacaataaaatccCAAACTGAAGCATCAGTGGAGAACTCACGAAAAATCCCAAACTGTGCAGACAACTAGTGCAATGAAAACAAAGTCAGTAATTGGCCTTATGTGCCAGAACGCAATTTAAGCGAGTAATCAATGCATTCTCCGGTGATTAATCCGATTTCAATTACAAACGGCGATTATAAAATTGTTTAATTAGAATGGTCTTATTTCTGCAACTGAGGAAGACACAGAATATTGTTACACCCATAGTTATTCAACTGATTTAACTAGATATTCCCGATTTAAGGAAACAGCTAAATTTGTTGCAAAAAAACTATTAATGACCAATATTTACCAACCGGATTTAAACACACTTTCCTTTTGAGGCACCCTTTAAGTCCAGCTTCATGTACAAATAGGTTTTGAGTATAGGGTCCAAATAGCGTTGGCCCAAACAAATTGTTCAAATCCTTCCAAAGATCAAATATGCACTTACTTTGCAAAGGTGTTAGCCCAAGCTTTGATCAATATCCAGCCATGGTTTGGATACACGTCTATAGGGTCAGTTTAAGTGAAGGTGTATAACTGAACGGTGCTGTCATAGAGCAGACAAATGCCCCTACGTGACGGTATAGTATATGTGCCACCAATTTTAGTGCATGAGTAACATAATGTCTTCCACTGTTTCCAAGGAATAGGGAAAAGAGCGCATGAAGATTTGGGACATAGTGATAGTGTTTCAGTAATGAATGTTGTTCTAAAGTGATCCCAGTTACTGTAAATCTATTGTGAGTAGACAAAGCCTATTGCTGCATACTTTATGACAAGTCACACGGAAGATGCCATTGGGCCTATTTAATCCCTCATTAGAACGGTAGAGTCTGCTGAAATAGCTGCTCTGTATAACCTAATTCCCAAGTACAGGAGAGAGAGCTCTCACAGATGTAACAAATAG
>XR_005638205.1
GAATGAGGCGGCCATTTTCAGTGTGTCCACAGAGAGGCGCTGTGGCTCCACACAAAACCTCCCTCCGTTTTGCCCATAGCCTATACTTTCTATGGTTTTGCCTGGACGTCATTTTTCGGTGTACCTGAGCGTCCACCTGCTCTGCTCACTCTCCCACCCAGATACTAATTGTGTGGGGAGGTAAACATAGCAGTCAagtggagaggacggcgagtCAAGCGTGAATATCAATCTCCCCACATCAGTGTCATCAGATGACTTTGACTGAGTTGAGGCGGGCTCATTAGAGCGCTGGAGCAGGTCGCAATAACATCCAGGTGGAGGCCTCCGAAGCTACGGAAGCCCGCAGAGCTCACCAGTCAACAGCTCTCCAGGCTCTCCAGGCTCTACCTgcctgctcctgctgctgccaCACATCACTTCAGGAAACTGATGAACTGTACTAACCTCAGATTAACCTCCCACCCCgtctttctttttctgcaaGCCCAGACCATCACTGGAGTGAATATTGGAAGCTCGTGTCTGCAAAGCCCTGCCCTTGGTGAAACCCAGAAATCAAATGAGAGGAGACAACGACAGCTTAACGCAGTAAAGACTCCCACACTGAGTTGAAATGGAAACCAAACGCAACAGGTTCCAGAAAATCAAGCGtaaggaggaagaaagagatCAGATAACAAGGCAGCGTGGAGGCGCGAGCACGTGGTGTCACACGCTTGGCGCTGCAACCACCGGGAATGAAGTGACAGGCCGCGGGGGAGCACAGGGACAGAATCAAGAGTGGTGGCTTGGCCGTAATATCCAATAGGATCTTGGTCAGAGTATACACCCCGCGGCTCTGATGTCTTCCATCTGCAGGTCCCTGTGGCTCCGTGGCAACGGGAGACTTGACGGCAGGACGGGACAGCAATTATTCTCACTTCTGTTGGACTTTGGGCTCAGGCTCTTCTTGGTTGATGCTCAAGAACACAAATTGCCTTTTTGTTCAAAAGGCAAAAGTTGAAATGTTTACATCCCTTGAAACTTATAACCTAatcattaaaggtgc

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU310024 False 1387 lncRNA 0.49 6 17602206 17790920
TU310030 True 2651 lncRNA 0.45 7 17602206 17800250
XR_005638202.1 False 918 lncRNA 0.52 6 17602194 17790439
XR_005638203.1 False 992 lncRNA 0.52 7 17602193 17790439
XR_005638204.1 False 2587 lncRNA 0.45 6 17602194 17800247
XR_005638205.1 False 1051 lncRNA 0.51 7 17602192 17790439

Neighbor

gene id symbol gene type direction distance location
brd1a brd1,LOC101475857 coding upstream 471 17584577 ~ 17601721 (+)
trnak-cuu_15 NA coding upstream 12029 17590091 ~ 17590163 (+)
alg12 alg12 coding upstream 25765 17570902 ~ 17576427 (+)
pim3 pim3 coding upstream 82675 17514539 ~ 17519517 (+)
il17rel NA coding upstream 253233 17331520 ~ 17348959 (+)
cerk cerk,LOC103356477 coding downstream 474171 18274421 ~ 18313706 (+)
alg10 alg10,LOC108244056 coding downstream 735479 18535729 ~ 18539427 (+)
LOC120553631 NA coding downstream 931454 18731704 ~ 18738370 (+)
LOC120553744 LOC103369285 coding downstream 1062622 18862872 ~ 18889356 (+)
LOC120553745 NA coding downstream 1100365 18900615 ~ 18901342 (+)
LOC120553531 NA non-coding upstream 301172 17299723 ~ 17301020 (+)
G228392 NA non-coding upstream 396552 17187926 ~ 17205640 (+)
G228384 NA non-coding upstream 463841 17137271 ~ 17138351 (+)
LOC120553376 NA non-coding upstream 481608 17119099 ~ 17120584 (+)
G228375 NA non-coding upstream 486849 17113825 ~ 17115343 (+)
G228571 NA non-coding downstream 563000 18363250 ~ 18368382 (+)
G228581 NA non-coding downstream 628875 18429125 ~ 18465053 (+)
LOC120553397 NA non-coding downstream 681838 18482088 ~ 18485638 (+)
G228593 NA non-coding downstream 733051 18533301 ~ 18534349 (+)
G228605 NA non-coding downstream 804743 18604993 ~ 18663972 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 679369 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 685264 16880276 ~ 16916928 (+)
stmp1 NA other upstream 734396 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 770949 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 1322131 16267136 ~ 16280061 (+)
srr srr,LOC105936311,LOC103459528 other downstream 729886 18530136 ~ 18533114 (+)
LOC120553630 muc19 other downstream 1022582 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 1552733 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 1610240 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 1831687 19631937 ~ 19839382 (+)

Expression


Co-expression Network