G228522


Basic Information

Item Value
gene id G228522
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17517663 ~ 17600185 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU310039
tttgctagAAAAAAACTGTCCCAGCAATATATCATATGacctgattaaaaaaactacTACAGTTAAGTACAAAATGAAATATACCAAAACTACCCAATGCTACCCAGAAAAAAAGGCAAGAGTATAAAATGAAATGTCTTGAAGTCTAcaactagaaaaaaaaaaaaaaagttagaaaaagGTTACTTAAAAAGAAGGCAAGTATCCACCACAAAATGTGCCACTTTACCACAATCAGTTTGCACGTCTTTCCTTGGAtataaagtaatgcaaaagcTTTACAATAAGTTACCGCAGGCACGTCTCCCTACGACTACAGCAAAACCAAGTAACAGTCAAATGTATCacataaaaatacacttttactttttttttcctccactttTTTTTGGCAAACAAGTTCACACGTCACACAGAAAATGAGATCGGCAAAAAACTTCTGGGTAGCAACATTTTTGGTTTCTTGAGAACAATATAACGTTCTGCGTCCACGACATCAGACTGCCTGTATGAGCTTCAGAGACTTACATACCGTATTACCGTGTATTCAAATCGTATAAATATatctggaaaaaaatatatactaaaactatttttaatacaaaaatTAATAAATGCCAAATGGAAGCTTACAATTATTAACCtcaataacttaaaaaaaaaaaatgaaaaagggaaTACTTTCATACTTTTCTGAAACATGACATTTTAGCCCTAATCTCCTTAAACTaaggctttttcactttttttttctccattcttCTTGATCACTCAGCACTGTCAAAATAGCACTCACATGTTAGTGCTAAGAATGCATCAAGTATAAATATTAAGAAAACCCCTGTACAGTACCCATTGATgtcaaaattacaaaataagTTAGTGTCAGGCAACTGTACAgaatatttacagtttaaaaacaaaGGAAGATATTTGTAAATGGAGAGGACCAGTAAGTAAATGTGACATAACGCAAGCTTTGGCTACAACTGAAGAGCCCTCACGTAGGCATGAAATGTACGTTTTCTGTCCACTTTAGCTGCTTTACCAGCTACTAAACGCTTCTTTTCTTAATAACAGAAATGATGACTGGCTACCTGCCAAAACAACGGAGCCATCAGCCACAGCCAAAATGTAACGGTCGGTGTTAAGTTCTTGTCTCACTACAAAGTCCTGACAGCGCAGAAACGTTTGGTAAGGCTaccaaaatgtaggaaatcaaTCACtaactgtttcttttttttttttttttccttgaaatgatgaatgaaaaTGACAGTCATGATTggtggagtgagtgagtgagtgagtgagtgagtgagtgagggagggaTGGGAGGTGGACATAAAGAGCAGTCTCTGAGCACAGTTACAAGCCTGGAGGTGGAGAGGAATAGATAGACACATTcatttcagcagcagcagcagcggccatATCCCAGCGGCACATGGTAGGAGTGTGTGCGAGTAGGAATGGATGAGGAAGAGACACCACCTGTTACAGCAGGTGCCCAGTAAACATTTGAGTCTCCTGCAGAGGCAGAGAGTCGGGGGGGGAGGGAGTAGAGGAAGGTATTTGGTACAGGAAacgtacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtggggatgggggggggtaTGTGTGTTGACATTTTGTAGACATTCAGAAAAGACAGGATCCAGTTTCCAAACACCTGTTCAGGCTATAGAGTGATTGAGCAGCGTTAAAGAGAGCGACACACAGTTGAGTCGAGTGTTTTTCAAGTATTCCATTGTCAGGAAGAGCCCCCAcctctttctctccatataATGCTATCTTAGCCTCTCGGCTGTGGGTTGTTGGCTTACAGTGATGGAGAGGATCAACCTCCTCCCCCATTCCATCAGAGCATAGGCAACTTACCCACCAGGCCACGGGCAAACCCAAAAAATAGAGTTGTTAATGAAAGCCCCCCAGAAAAGCAGCTTtccgagaaaaaaaaaaaaaaaaaaaaaaaaggcactacaaaatcaaaattaaaacatttaaataaaaaaaggttttctccAAGCTCTATGAGAGCAGCCATGTTTGAATAGGAGGGTCTTGCCAGCTGCATATACCAGCCTAGTAACaaaacaagtaaaataaaatttaaaaaagagggAAGGGGAGAATAAATAGTGCTGGTAAGAccgccccaaaaaaagaaaaaaaagaaaagttccCGTATAGGAAACAAGTATTAtcaactgaagaaaaaaaaaaaaaaggaggatggGGAAAATAAGATAAGGAAGAACAAATAGTAATAAATTAGAAATTCCCTACAAAAGAGAAAAattaaagtacatttttcttGCTGGAGCAGCTGAGTCAAGCGCCCAGCCACTGTTGGGCTACAGGCTTCCGGCCTCGAGTCCATATCACCCCCTCCAGCTAACACCCCTTCTTTCCCCAGAAAGTCTTTTGGGTCCATCAGAGCCGTCCTCAGAGGCTCTCCTTGCTCGAGCTCGTACTTGACGAAGAGTCTGTGTCGATGGTCCTGAGGCGGATCTCACTGGTGGTGACCGGCTCCTCTTGTGACTTGGGTGACTCGCTCGTCGTCGCCCTCATCCAAGGGTGGTCGCAAATCTGCTCCAGTGTAGGCCGGTCTGAAGGCCGCAGGGCCAGGCACCATTTGATCAGCTGCTGGCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310039 True 2748 lncRNA 0.41 2 17517663 17600185

Neighbor

gene id symbol gene type direction distance location
LOC120553454 LOC104933464,LOC108241015,LOC102202158 coding downstream 186285 17306223 ~ 17331378 (-)
trim24 LOC103366983 coding downstream 282970 17222334 ~ 17234693 (-)
LOC120553673 NA coding downstream 297306 17208626 ~ 17220357 (-)
atxn10 atxn10 coding downstream 310209 17196941 ~ 17207454 (-)
pparaa ppara coding downstream 382533 17116753 ~ 17135130 (-)
tbc1d22a tbc1d22a,LOC106927306,LOC103356476 coding upstream 533899 18134084 ~ 18270751 (-)
celsr1a NA coding upstream 828922 18429107 ~ 18523877 (-)
trmu trmu,LOC102792203 coding upstream 924751 18524936 ~ 18530092 (-)
tprkb tprkb coding upstream 933453 18533638 ~ 18535642 (-)
LOC120553458 cpne8,LOC104935575,LOC103365370,LOC101074159 coding upstream 960911 18561096 ~ 18652690 (-)
LOC120552976 NA non-coding downstream 114831 17402248 ~ 17402832 (-)
G228474 NA non-coding downstream 242186 17272948 ~ 17275477 (-)
G228439 kdm5a non-coding downstream 273683 17243465 ~ 17243980 (-)
G228423 NA non-coding downstream 295435 17221205 ~ 17222228 (-)
G228401 NA non-coding downstream 379388 17137270 ~ 17138275 (-)
LOC120553191 NA non-coding upstream 704400 18304585 ~ 18346997 (-)
G228684 NA non-coding upstream 955868 18556053 ~ 18558509 (-)
G228683 NA non-coding upstream 958416 18558601 ~ 18559279 (-)
G228713 NA non-coding upstream 1280976 18881161 ~ 18884075 (-)
G228731 NA non-coding upstream 1293455 18893640 ~ 18975820 (-)
G228465 NA other downstream 215465 17295122 ~ 17302198 (-)
slc37a3 slc37a3 other downstream 496928 17007724 ~ 17020735 (-)
G228291 LOC103356441,LOC102298269,LOC102212027 other downstream 694231 16748842 ~ 16823432 (-)
G228191 NA other downstream 1725810 15771238 ~ 15791853 (-)
znf800b znf800,LOC103364713,LOC103355189,LOC108412280 other downstream 2427680 15055475 ~ 15089983 (-)
tafa5a fam19a5,LOC103356475,LOC102793695 other upstream 230431 17830616 ~ 18100995 (-)
gramd4a gramd4,LOC103376144 other upstream 763074 18363259 ~ 18421407 (-)
LOC120553633 slc2a13,LOC103369283 other upstream 1138211 18738396 ~ 18823090 (-)
sox5 sox5 other upstream 1428424 19028609 ~ 19270336 (-)
G228934 fam19a2,LOC103364248 other upstream 2132917 19733102 ~ 19807098 (-)

Expression


Co-expression Network