srr (srr,LOC105936311,LOC103459528)


Basic Information

Item Value
gene id srr
gene name srr,LOC105936311,LOC103459528
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18530136 ~ 18533114 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU310117
CCGTAAACATTACGGTAAATCACTTTTTAAAGTAACGGAAAATTTCAAACAAATAATAAGATGGGTGAGTTTTCTGAAGAAGGCCTCACATTGGATCTGCTGAGGGAAGCCAGGGAGGTGGTGAGAAGCAGCCCCCTGGGTGTCATCAACACTCCCATGATCCCCTGGTGCCAGACAACCCTGCCTCTCGACATCCACTGCAACATCCACATCAAATTGGAAAACATGCAGAGAACTGGGTCGTTCAAGATCAGAGGAGTGGCCAATCAGTTTGCCAGGAGACCGAAGGGAGGTCATTTTGTCACCATGTCTGC
>XM_039791713.1
TGGGACTGGGAGCCGCAAAAAACGTAACACCGTAAACATTACGGTAAATCACTTTTTAAAGTAACGGAAAATTTCAAACAAATAATAAGATGGGTGAGTTTTCTGAAGAAGGCCTCACATTGGATCTGCTGAGGGAAGCCAGGGAGGTGGTGAGAAGCAGCCCCCTGGGTGTCATCAACACTCCCATGATCCCCTGGTGCCAGACAACCCTGCCTCTCGACATCCACTGCAACATCCACATCAAATTGGAAAACATGCAGAGAACTGGGTCGTTCAAGATCAGAGGAGTGGCCAATCAGTTTGCCAGGAGACCGAAGGGAGGTCATTTTGTCACCATGTCTGCGAAGAAAAATGGGAACTATGGGAAGGGGtgggggagggaaaaaaaaaaaaagggtaaaaaaaaagggggggggggccccggcccccccccccccccccccccccccttcttcctgggggttAGTTTCGGGGTGGAGGTGGAGCGGGTTCCTACCTCCTGTCTGATGAATGTGGTGAACCGCTGTGTTCAGGAGGAGAACATGACCTTCCTGCACTCCTATGATGATTTGGATCTAATAGCAGGACATGCCAGTCTAGGTATGGAAGTTCTGGAGGTGATGCCTGAGCCTGATGTGGTGGTGGTGTGCTGTGGTGGAGGGGGACTGCTGGCAGGTGTAGCTGCTGCCATCAAACTGTCAGGCTGTGATAAGACCAGAATCTACGGCGTGGAACCAGAAGGAGCCTGCACCATGTACAAAAGTTTCATTGAGAAGAAGCCAGTGGGCATGGACTCCCAGAGCATTGCCTCAGGACTTGCACCACCTTTTGCAGGCACACTGCCCTTTGAGTTGTGTCAGCGTTATGTGGAGGGTATTGTCCTTATAAACGATGaagagatcaaggcggccgtgTCCACCCTCTACCGGTCTGGACTTGTGGTGGAGCCGTCGGGCTCTGCTGCGTTCGCTGCAATCGTTAACAACAAGATACCCGAGCTGGAGGGGAAGAACGTGGTGTGCATCCTCAGCGGAGGCAACATCGGAAAAGACGAGCTTACCAACTTCCCAGACTGACGAATGTGCACTACCATAATGTGACTTTTCTTAGAGTAACACTGTGAAGATGAAAATCTATTCAGGTCAAAATGTTATCAGTACAACTAACTTTATGAGGAAGTCTCTGTTGTAACAGAATACTTGTTTGGGAAGTGCAGATGAATCATGATGAAATTAACATTCATTTTTTATAACCAAACTCTCTAGAAGAGTATTTTAAGTGCCACAATCTCAAGTCGATCAATATACATTTCATttcaatgtaattttgtttgttccagtgtgtgttttaataaacACCTCCAAAATCTCATTTCATTaagagtcaaaaaaaaaaactgaatgaaagtgaataaaaagtaaACATCCAGGTGCAAGTTAAGTAATGCTgtgacattttacatttctatTGGTTAGAGAATT

Function

symbol description
srr Predicted to enable L-serine ammonia-lyase activity and L-threonine ammonia-lyase activity. Predicted to be involved in L-serine catabolic process and threonine catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Orthologous to human SRR (serine racemase).

NR:

description
mitochondrial tRNA-specific 2-thiouridylase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310117 False 314 TUCP 0.48 3 18530165 18531168
XM_039791713.1 True 1481 mRNA 0.47 8 18530136 18533114

Neighbor

gene id symbol gene type direction distance location
cerk cerk,LOC103356477 coding upstream 216430 18274421 ~ 18313706 (+)
brd1a brd1,LOC101475857 coding upstream 928415 17584577 ~ 17601721 (+)
trnak-cuu_15 NA coding upstream 939973 17590091 ~ 17590163 (+)
alg12 alg12 coding upstream 953709 17570902 ~ 17576427 (+)
pim3 pim3 coding upstream 1010619 17514539 ~ 17519517 (+)
alg10 alg10,LOC108244056 coding downstream 2615 18535729 ~ 18539427 (+)
LOC120553631 NA coding downstream 198590 18731704 ~ 18738370 (+)
LOC120553744 LOC103369285 coding downstream 329758 18862872 ~ 18889356 (+)
LOC120553745 NA coding downstream 367501 18900615 ~ 18901342 (+)
LOC120553380 NA coding downstream 368436 18901550 ~ 18911762 (+)
LOC120553397 NA non-coding upstream 44498 18482088 ~ 18485638 (+)
G228581 NA non-coding upstream 65083 18429125 ~ 18465053 (+)
G228571 NA non-coding upstream 161754 18363250 ~ 18368382 (+)
LOC120553790 NA non-coding upstream 729886 17602192 ~ 17800250 (+)
LOC120553531 NA non-coding upstream 1229116 17299723 ~ 17301020 (+)
G228593 NA non-coding downstream 187 18533301 ~ 18534349 (+)
G228605 NA non-coding downstream 71879 18604993 ~ 18663972 (+)
G228611 LOC102192848,LOC101469293 non-coding downstream 143237 18676351 ~ 18677565 (+)
G228622 NA non-coding downstream 205370 18738484 ~ 18739484 (+)
LOC120553383 NA non-coding downstream 359060 18892174 ~ 18897527 (+)
G228335 ahcyl2,LOC103371314,LOC107725924,LOC107656398 other upstream 1607313 16919663 ~ 16922823 (+)
morn2 morn2 other upstream 1613208 16880276 ~ 16916928 (+)
stmp1 NA other upstream 1662340 16866310 ~ 16867796 (+)
cald1a LOC102212027,LOC102781594,LOC102298269,LOC103382882,LOC106941466,LOC103156466,LOC101472471,LOC106916645,LOC106525550,LOC107395349,LOC103356441 other upstream 1698893 16771058 ~ 16831243 (+)
tmem168a LOC103368481 other upstream 2250075 16267136 ~ 16280061 (+)
LOC120553630 muc19 other downstream 289718 18822832 ~ 18855314 (+)
LOC120553164 NA other downstream 819869 19352983 ~ 19355551 (+)
G228784 LOC103359233,LOC104943309,LOC100709697 other downstream 877376 19410490 ~ 19413704 (+)
LOC120553210 LOC104943308 other downstream 1098823 19631937 ~ 19839382 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other downstream 1319814 19852928 ~ 19905952 (+)

Expression


Co-expression Network