G228946 (LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279)


Basic Information

Item Value
gene id G228946
gene name LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19852964 ~ 19905943 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU310618
CAAAGTAGTTTATTTCAgtgaattttacatttacatttgcacTGATCAAAGTACATGTCATGTTTTGAAATGCCTGAATACAGTAAAATGGAAAAATGCATTCtggtttaaaacaaatgaatgacttaatgttcatacagaaacATAAATCACTGCATAAAGTTAAACATCACCAAGGTGCATTTCTTCTGCATGTGGAATGATCCAATGAAAAAGTCAGGGTGCATAACTATAGTGAAATCTCATCTTAATATGCAAACATATTCACAATCACACAGTGAATGCAGTTTGTCAGGAAAAACAACAGGAAGCAGTTGCTagtgtatatatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatttgcagCCCTAATGTCACAGGAAGCACCAGCAGCAATACTGATGATCTTTTATGCCCTGCCTCATTTCACTAAGAGGCTCAACCCGACCGCTGGTGGCGTTTTCAATTTACTTATGAGGCAGACAGGGAAAGACAGAAGGAACTGCAGCTCCCACAGTAACAAACAGCGCCTTATAACACAGACCAAAACAGTGATTCTGTCTGCAGTTCACAATAAtattacattcattcatttattgcaaaaatatcagcaTTTTGCAAACAGTTCAACATATTGGGAAATGGAATTTTTAGTTGCAGTAGAATCGTTGTGTAAGCAATAGAAACTAAATCTTCAAGTGGTGCTGTCAACAATAAGTCTAAAAATTGTGTGAAACAAAAACAGCTTACATACACACTACAAAACCTCATTTCATCAATAAAAGATTCCTGagcaaaatgtattaaattaaatttatttatgttaACCACATCAATATGTGCAACGGTCAATGGAAACAGACTTAGTGAATAAACCATGACGTACACGTGATAAGCTTACATTGAAGACACAGAAAATGGTGGCAGATAAGTAAGATAAGATTAGTGTTATACGGTCTTCTAATTAAATAAGCAGTCTAAGTGACACTACTGCATTAAATCCACTCGACTCCTCACACTTCAATGGATAGCATTGCCTAATTATCAAAAGGCCTTGTTGTTGGGTCTTACAGCTTTGTCCCTAAGCAATGACGCAGGAATCAGACTTCTTTGGTTTCGGACTCGGTGAGGAAGATGGAGGAGATGGAGATGACGTGGGTTGGTTAACTATTCTGCTGCGTTGGTATTGGTAAGAGGATGTGCTGGGTTGGTAAGTCAAAGTGCTGGGTTGGGACGAGGCTGTGCTGGATGTATAACTGGATGTACTGGGTTTGAATGAGGCTGTGCTGGATGTATAACTGGATGTACTGGGTTTGAATGAGGCTGTGCTGGATGTATAACTGGATGTACTGGGTTTGAATGAGGCTGTGCTGGATGTATAACTGGATGTACTGGGTTGGTATGAGGGTGTGCTGGGTTGAACCAATGTGCTGGGTTGATAAACTGATATACTGGGTTGGGCAgctggtctgattggttggggAGCTGGCCTCGGTACCGGTACTGGTTTGCGTGCTGGTACTGGTCTCAGTGCCGGTACTAACGCAGTACCAAATAAGTCGACGGGCGGTTGCGTGGACTTGTACTGCAGCAGGTACTCGGGGTAGATCTGGTGCTTCTCAAACACGACAAAGATGGAAGGGGATATAACATCGTCGACGCAGCTGTCATAGAAGTTTATATCTCCGCCGTCCTTAGAAGGAGGTCGGACGTAGTCGGAGGACCCTCTGGTGTAATCTCCCACCAGCACCCGTGAGATGAACAAGGACTTGACATCAGAGTCACCGGTGTAGCTGTGGGAGTATTCTGCATCCCGG

Function

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 12-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310618 True 1875 lncRNA 0.42 2 19852964 19905943

Neighbor

gene id symbol gene type direction distance location
LOC120553212 fam19a2,LOC103364248 coding downstream 46209 19733066 ~ 19806755 (-)
lrig3 lrig3 coding downstream 283907 19546626 ~ 19569057 (-)
rpap3 NA coding downstream 348658 19495419 ~ 19504306 (-)
trnal-cag_24 NA coding downstream 399936 19452946 ~ 19453028 (-)
trnal-cag_23 NA coding downstream 400414 19452469 ~ 19452550 (-)
LOC120553419 timp3,LOC103152565 coding upstream 77536 19983479 ~ 20000522 (-)
cep83 cep83 coding upstream 354082 20260025 ~ 20272144 (-)
hcfc2 hcfc2 coding upstream 366583 20272526 ~ 20286587 (-)
mcm10 mcm10,LOC102783079 coding upstream 488123 20394066 ~ 20409676 (-)
optn optn coding upstream 504252 20410195 ~ 20430496 (-)
LOC120553214 NA non-coding downstream 134552 19717222 ~ 19718412 (-)
G228885 NA non-coding downstream 283605 19550617 ~ 19569359 (-)
G228882 NA non-coding downstream 338530 19514103 ~ 19514434 (-)
G228881 atp23,LOC106609469 non-coding downstream 345404 19506683 ~ 19507560 (-)
G228880 NA non-coding downstream 353354 19499238 ~ 19499610 (-)
G229062 NA non-coding upstream 449693 20355636 ~ 20357563 (-)
G229071 NA non-coding upstream 476522 20382465 ~ 20391508 (-)
G229076 ccdc3,LOC102778083 non-coding upstream 528212 20434155 ~ 20437536 (-)
G229079 NA non-coding upstream 536377 20442320 ~ 20450128 (-)
G229095 NA non-coding upstream 629342 20535285 ~ 20535597 (-)
etv6 etv6 other downstream 13614 19806814 ~ 19839350 (-)
G228934 fam19a2,LOC103364248 other downstream 45866 19733102 ~ 19807098 (-)
sox5 sox5 other downstream 582628 19028609 ~ 19270336 (-)
LOC120553633 slc2a13,LOC103369283 other downstream 1029874 18738396 ~ 18823090 (-)
gramd4a gramd4,LOC103376144 other downstream 1431557 18363259 ~ 18421407 (-)
rerg rerg other upstream 160952 20066895 ~ 20122393 (-)
cdk17 LOC104930593 other upstream 395149 20301092 ~ 20354627 (-)
G229199 NA other upstream 1051714 20957657 ~ 20958220 (-)
ptprz1b NA other upstream 1157748 21063691 ~ 21145533 (-)
slc38a2 slc38a2 other upstream 1555133 21461076 ~ 21474602 (-)

Expression


Co-expression Network