G229076 (ccdc3,LOC102778083)


Basic Information

Item Value
gene id G229076
gene name ccdc3,LOC102778083
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20434155 ~ 20437536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU310783
gaactgtgcatggtccctgacaaataaactaataaaataaaaaaaataaatacaaattcaGAAACTCTTGCATGCTAACTAAGCACAGACCAAGAAGATGAAGTTCTGCTACACGTTTTTGCAAAAAGGAGTCTGACACAATGTAAAAACATTCCTTGTTATTTTACGCTTTATTCCTCGCCTCACCATCACTGATTATGTCCCACAAGAGAGAAATGGCAATTTAGCTTGTGATGaacgcacctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcttttgcatcCCTCTCCATCCACCCTGCCTCCCGTTTTGTCGTGTTTTCGACGATGTGTTTTCCTTTCATATGCTCTGGTCTCGTGATGCGACGGCTGCTCGGCTCCCTCCCGAGCTTTTGGTTTTCCAGACTGAATTAGAGGAATATTTTAGCGACATCCCGCTGTTCAGAACATtgctgcccacacacacacattccagtCACTTGATggaccagacacacacacacacacacacacacacacacacacgtctctttctctccctgtatactacacagacacacatacaatgtATCCTCTGACCTTAACCTCTCTTTACACTCTCTGCGTGATGCTGTAGTGCTTAGCTGaaccgctgtgtgtgtgtgtgtgttttttttttgtactccGCTGACCCAGATGTTAATGGTCTTCTTCAAACATTGTCACGTTCACACTGATGTTCATCCAAGTTCAATTTTATATGGAGACGAACAATccaaacattacaaaaaaaaaaaaaatatccacaTGCAAGCTGATGTTCCAAACTTTCAAAAGCTCGAAGTTAATAATAAATGAACCTTCTCAAACACCCCAGACTTCTCATTGTCAGTTACACCTCTCTCTGCTcacaaagtaagaaaaaaaggcGAAAAATCACAACATCATTTCGAGTGAAACGTAATGTCTCTTATCATTGCCTTCGCCGGGCCGTGATAACATAAAAGGCATTTTTCAATGTCTTCTCTTTGGTTGAGTTCTAATGTTTGGTTGTTGCAGATTGTCCTAGATATGTCTTTAAATCTGCTGTAATCAATATTTATCTATATTAATTATGAATTGTTATGTGGAAGGGCTTGCTTGTAGTGATGAACCCCACAGAGAATGATCACCCAACTCTGCAGATCCACTCAGCTCTGTGTACATTTTtggcatctttcagctcattattttttcaaattattttttttccggCCCGCAACTTTAATGTTTTGATTCAGTCTAATCAGCGTTGTTTCCAGTCGCAGCAGGGGGCTGTTTTCTGTACTAAAAGAATGAAAAAGCTCtaataaacccactgtacaccaccagcccagcaccaaacagcagccaGACAACGTTAgcagaatgtaactaagtacatttactcaagtactgcacttaagtacaaaaCTTTCCATTTCTACTCATTTCaaaaagaaatattgtactttttactccactacattaataaGACAGCATTAGTAGATACTTTACAAGTTAAgattttgaaaacaaaacataaaacataatatattataaattaaactacctaACAATATaagggcctacaagtccagctgaaatgatgacACCATTAAACActtggttgattgacagaactgtttgggtCCTTTCTCGTTTCTataatgtgaggatttttctgcatcgagtacttttacttttaatactttgaaGTAAatgttcctgatgatacttgcatacttttattttacttaagtaacggATCCGAATACTCCTTCCACCACTGCCTCCGACCTGACCCTACCCGGTAAACACGTATGTCTTTCAAACTTCATGCCCCGAATGGGTAACAcgttctgtttttatttacaataaaaaacaaaacataccaAGATAACCCCAATGACATCACtcgggttattttttttttttagaattgaCAAAGCTCCGGCAGAGCCACAAAAGATATTATACACCTGTTTCACAGGCTGAGTAGGTCTCCGTCCCACCAAACCGTAAAGTGACTTTGACGTGTAAAGATAGGTGGCGTGCCCCTTTAAATGATTAGTTCTCATCGTCTAGCTCCGGTATAAACGGACCTATCCACGACCTTCTTTTGTTTTAAAACTGAAACTACTTTTACTTCAGGTTGGGAAAACCAGCACTCCAATAATAGAGTAAGCTCCTGCTGTTGCTGTTACTGTTGTCGCTCACGGCTTTGCTTTGTGCCAGAGCAAACCCCCCCCACTCCCACCCCACCCCCATCctatgtagggttgggtaccaaaacccggttccactaaggaatcggaccggattacaacacaaatttcggttcctcattacACTTAacgtgtcgactgaaatattttccctctgtcgctatgaaattaatgtaaaaatatcaccctttctctgtagtctacagttagctagctaccataaatggtaggctacttttaaaatgccatattttccctctgggctcaccaaaatggacgtaaaagcatattcaCCATTCACTGCAAGTGGTCGCTAGTAAAGATATtacatctttgatgtcatttttcagtttttcaagaatcggtttaggaattggaatcgttttaaaagcgccggttcggcatcggaatcgtaaaaaccCTATGTGATCACGGCCCGGGGAAGAGCACAGAGCCACAACTGAACCCAGTTGTAGAAGGCAGCAGAGCTACAGCACTGCTCCACCTGCAAGAGTAATCATCgggaaaataaatgtttgactCCCTTTCAGGAAAATTGTTGTTCTTTTGTCAGATGACTGGGAACTGCTCTTACCGTTACTCTTGTGTTACGGCAATCAGGGAAACAAAATAGAGGAGAAGTTgtgtatttacaaaaaaaaacaacctatgtAGATTATTAGTGTGTTTAGTCATATGTGTAATTTGCTATTTCTTTGTCCCTTACATAGAGACCGCCCAGCAGTCTCTCGCTCTCCGCGGCCAGTTTTCAGTCCAGGTGGGTTGCCAGTTTTGGATTAGTTAAAGTTGCATCCTCTTGCGTAGCGCCGTGCTTGCATAACGCCCGGGTGGAGGCTCCTCCTGCGTTATGGCGTTGAGGTGGTGCCCCGCCCTGCGCTCTGCAGCCTTCAGCTTCTCCTGCAGCTCCTGCGCCTCCTGCTGGGCCTTGCGCGCGGCCTTGCGGGCGTTCCTCAGGGAGCGTTTGGCCTTGCGAACGCGCTCCTTCAGCTGCCGGTTCCTGCGCTCGGCCGCGGCCAGGCGCTCCTGCATCTTGcggcctctctcctcctcctcaaacaGCGCGGCCTGCACCGAGGAGCACAGC

Function

symbol description
ccdc3 Involved in negative regulation of gene expression; negative regulation of lipid metabolic process; and negative regulation of tumor necrosis factor-mediated signaling pathway. Located in endoplasmic reticulum and extracellular region.

NR:

description
PREDICTED: coiled-coil domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310783 True 3357 lncRNA 0.43 2 20434155 20437536

Neighbor

gene id symbol gene type direction distance location
optn optn coding downstream 3659 20410195 ~ 20430496 (-)
mcm10 mcm10,LOC102783079 coding downstream 24479 20394066 ~ 20409676 (-)
hcfc2 hcfc2 coding downstream 147568 20272526 ~ 20286587 (-)
cep83 cep83 coding downstream 162011 20260025 ~ 20272144 (-)
LOC120553419 timp3,LOC103152565 coding downstream 433633 19983479 ~ 20000522 (-)
camk1da camk1d coding upstream 18139 20455675 ~ 20530744 (-)
LOC120553073 NA coding upstream 99520 20537056 ~ 20544945 (-)
cdc123 cdc123 coding upstream 112498 20550034 ~ 20564985 (-)
il15ra NA coding upstream 183009 20620545 ~ 20640722 (-)
ano2b ano2,LOC103459666,LOC108245555,LOC102202227 coding upstream 487637 20925173 ~ 21008235 (-)
G229071 NA non-coding downstream 42647 20382465 ~ 20391508 (-)
G229062 NA non-coding downstream 76592 20355636 ~ 20357563 (-)
G228946 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC106945279 non-coding downstream 528212 19852964 ~ 19905943 (-)
G228947 LOC103152567,LOC106913527,LOC106945279,LOC106922717,LOC102300237 non-coding downstream 552076 19877097 ~ 19882079 (-)
G228949 NA non-coding downstream 575292 19858103 ~ 19858863 (-)
G229079 NA non-coding upstream 4784 20442320 ~ 20450128 (-)
G229095 NA non-coding upstream 97749 20535285 ~ 20535597 (-)
G229096 NA non-coding upstream 99037 20536573 ~ 20536801 (-)
G229098 NA non-coding upstream 103652 20541188 ~ 20542936 (-)
G229099 NA non-coding upstream 109357 20546893 ~ 20547497 (-)
cdk17 LOC104930593 other downstream 79528 20301092 ~ 20354627 (-)
rerg rerg other downstream 311762 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 594805 19806814 ~ 19839350 (-)
G228934 fam19a2,LOC103364248 other downstream 627057 19733102 ~ 19807098 (-)
sox5 sox5 other downstream 1163819 19028609 ~ 19270336 (-)
G229199 NA other upstream 520121 20957657 ~ 20958220 (-)
ptprz1b NA other upstream 626155 21063691 ~ 21145533 (-)
slc38a2 slc38a2 other upstream 1023540 21461076 ~ 21474602 (-)
LOC120553090 NA other upstream 1333552 21771088 ~ 21811097 (-)
G229716 NA other upstream 2667224 23104760 ~ 23239573 (-)

Expression


Co-expression Network