LOC120553023 (LOC106946322,LOC103151516,LOC104922640)



Basic Information


Item Value
gene id LOC120553023
gene name LOC106946322,LOC103151516,LOC104922640
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21148267 ~ 21150351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU310964
CTACTACGCGCGCCCTTCACTTTACAGTCGTTACAGTACCTGAACACCCTTGCAAAAGTCTTGTGTTTGTAGTTCAATAACAGCATTGCTCTGATTTCTGGGGTTTTATGAAGTGACAGAAACTAACACCAGCAGTGGTTGGGACAAATAAATCATTTTTGGAGGTTTTAGCGTTTAATTCGGATCAGGCAGCGATGGCGGCTCCAAACTCTGCAGAAAGGAAGGCATGCTGGGACGCCAGGGACCAGCTATGGAAATGTCTGGATGACAGTGGTGACAAAGCTGCCTCCTGCCAGAAGTTCCAGAGCAAGTTTGAGGCAAATTGCCCCGCTCAGTGAAATATTTCACCAAgaggagagacttcctgaaaTACAAAGATAAGATGCAGACAGAAGGATTCACACCTGCCGAAGGCCCCCAGCAACCTTCCTAAATCACTGGACGGCACACTGACTTTCAGCCTTATTCAGACCACGGCCAGAGGGGCAGGACTTTATTATGGACCTGAACTTCACctttatcattatttatttgtacagAGATAAAAGCTACACACATTAGCAGCTCCAAGCGGCAGAATGAGCGACCTGTTTGGGCTTATTTGAGCTTCCCTCCTCAGAAATCTGTGACGTCAGCTCATTTTAACCAAcccagctgagagagagagagagagagaaactggaTGTAGACCGTTGGGATAAAGCCTGTCATTGGCTGCCTATTTCAGCTggttttctcctcctcttccgtAATCTGTTTTGTAAGGGCACCGTCGCTGCATTTGGGGCTTAGCACCGccaaagatgattgtgattggtttaaagaaatccaAACCATCCAGACTTGGAATAGTTGTGATCAGTGCAACGCTTACACAGACGcagtacatgcacacactggGTCTTATGTCTCATTCTAACACTGTTCACGAGGGATTTTCTGCGGTtgttttcagtgaaagcatCACCTCCTTTGCATCCGGTAGCAGCCGCAACATTCTGTGTGCAGAACACGGGGTAAAGTTCTACATCTGCGTGGAGTTTGGGTTGAAGTCACAAGTCTTGATCAATTCAATTATGCCAGTGTGATTTACAAATAAATGCCGATCTTTAGCGTTTGCTGATACTTAGCGTTTTAATTCTGGGACAGTTCCTC
>XM_039791072.1
CATCACGGCGCGACAGGGAAGTGCAGCTACTACGCGCGCCCTTCACTTTACAGTCGTTACAGTACCTGAACACCCTTGCAAAAGTCTTGTGTTTGTAGTTCAATAACAGCATTGCTCTGATTTCTGGGGTTTTATGAAGTGACAGAAACTAACACCAGCAGTGGTTGGGACAAATAAATCATTTTTGGAGGTTTTAGCGTTTAATTCGGATCAGGCAGCGATGGCGGCTCCAAACTCTGCAGAAAGGAAGGCATGCTGGGACGCCAGGGACCAGCTATGGAAATGTCTGGATGACAGTGGTGACAAAGCTGCCTCCTGCCAGAAGTTCCAGAGCAAGTTTGAGGCAAATTGCCCCGCTCAGTGGGTGAAATATTTCACCAAgaggagagacttcctgaaaTACAAAGATAAGATGCAGACAGAAGGATTCACACCTGCCGAAGGCCCCCAGCAACCTTCCTAAATCACTGGACGGCACACTGACTTTCAGCCTTATTCAGACCACGGCCAGAGGGGCAGGACTTTATTATGGACCTGAACTTCACctttatcattatttatttgtacagAGATAAAAGCTACACACATTAGCAGCTCCAAGCGGCAGAATGAGCGACCTGTTTGGGCTTATTTGAGCTTCCCTCCTCAGAAATCTGTGACGTCAGCTCATTTTAACCAAcccagctgagagagagagagagagagaaactggaTGTAGACCGTTGGGATAAAGCCTGTCATTGGCTGCCTATTTCAGCTggttttctcctcctcttccgtAATCTGTTTTGTAAGGGCACCGTCGCTGCATTTGGGGCTTAGCACCGccaaagatgattgtgattggtttaaagaaatccaAACCATCCAGAGCGTTTTGTCCCCTATCGCAGAATGTTAACTCGTGCGCTGTGGTGACAGGTCtgggcaatgcaagactagatTTTGACCTggaaatgacatgtaatgtccCTGTGGAACTTTACTAATGCCACTTGGAATAGTTGTGATCAGTGCAACGCTTACACAGACGcagtacatgcacacactggGTCTTATGTCTCATTCTAACACTGTTCACGAGGGATTTTCTGCGGTtgttttcagtgaaagcatCACCTCCTTTGCATCCGGTAGCAGCCGCAACATTCTGTGTGCAGAACACGGGGTAAAGTTCTACATCTGCGTGGAGTTTGGGTTGAAGTCACAAGTCTTGATCAATTCAATTATGCCAGTGTGATTTACAAATAAATGCCGATCTTTAGCGTTTGCTGATACTTAGCGTTTTAATTCTGGGACAGTTCCTCATTAGGTTAAATCTCAAGTGTGATTGACTTGTGgtgttttatgtaaataaaaaagaatacatacatacaa

Function


NR:

description
PREDICTED: cytochrome c oxidase assembly factor 6 homolog

GO: NA

KEGG:

id description
K18179 COA6; cytochrome c oxidase assembly factor 6

RNA


RNA id representative length rna type GC content exon number start site end site
TU310964 False 1155 lncRNA 0.46 4 21148293 21150281
XM_039791072.1 True 1377 mRNA 0.46 3 21148267 21150351
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Neighbor


gene id symbol gene type direction distance location
LOC120553657 LOC103369066 coding upstream 89185 21047937 ~ 21059082 (+)
LOC120553788 NA coding upstream 241446 20897219 ~ 20906821 (+)
ntf3 ntf3 coding upstream 283649 20816119 ~ 20864618 (+)
pfkfb3 pfkfb3,LOC102775874,LOC104933238 coding upstream 458321 20678049 ~ 20689946 (+)
rbm17 rbm17 coding upstream 492353 20642907 ~ 20655914 (+)
zgc:162331 LOC104922672,LOC101475914,LOC102301200,LOC102199861,LOC102799838,LOC101071909,LOC104956107,LOC100698522 coding downstream 33535 21183886 ~ 21219226 (+)
fgfr1op2 fgfr1op2 coding downstream 151069 21301420 ~ 21304922 (+)
tm7sf3 tm7sf3,LOC108229002 coding downstream 155263 21305614 ~ 21326282 (+)
scaf11 NA coding downstream 283230 21433581 ~ 21452526 (+)
trnal-caa_25 NA coding downstream 428962 21579313 ~ 21579423 (+)
G229205 NA non-coding upstream 85832 21037948 ~ 21062435 (+)
G229182 NA non-coding upstream 223208 20923948 ~ 20925059 (+)
G229130 NA non-coding upstream 540737 20607232 ~ 20607530 (+)
G229108 cdc123,LOC102776001 non-coding upstream 583087 20563063 ~ 20565180 (+)
G229060 NA non-coding upstream 693479 20442667 ~ 20454788 (+)
G229233 NA non-coding downstream 70097 21220448 ~ 21220812 (+)
G229263 NA non-coding downstream 114045 21264396 ~ 21264699 (+)
G229264 NA non-coding downstream 115061 21265412 ~ 21271111 (+)
G229352 NA non-coding downstream 353293 21503644 ~ 21613229 (+)
G229381 NA non-coding downstream 469622 21619973 ~ 21620222 (+)
ucmaa NA other upstream 756861 20382393 ~ 20391406 (+)
LOC120553418 NA other upstream 923082 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 974860 20147078 ~ 20173407 (+)
G228924 NA other upstream 1162619 19982248 ~ 19985648 (+)
LOC120553104 LOC103364246,LOC103152567,LOC106913527,LOC103459763,LOC103459764,LOC106945279 other upstream 1242315 19852928 ~ 19905952 (+)
arid2 arid2 other downstream 226521 21376872 ~ 21429238 (+)
G229423 NA other downstream 687571 21837922 ~ 21847020 (+)
G229425 NA other downstream 698860 21849211 ~ 21850601 (+)
G229422 NA other downstream 707632 21857983 ~ 21859209 (+)
G229428 NA other downstream 716850 21867201 ~ 21868297 (+)

Expression


LOC120553023(LOC106946322,LOC103151516,LOC104922640) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC120553023(LOC106946322,LOC103151516,LOC104922640) Expression in each Bioproject

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LOC120553023(LOC106946322,LOC103151516,LOC104922640) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network