slc38a2 (slc38a2)


Basic Information

Item Value
gene id slc38a2
gene name slc38a2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21461076 ~ 21474602 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311121
ACCCCCCCCTTGCTGGTGAATTTGTGATATTGAATTGGCTCCACTACACTGAACTTGAACTGATTCATCTCTGAATTATCCTACTGTGTTGATTCTGTGAAAACTGTTACATGTTAAAGCCACTGATACAGCGGCAGCAATCTTGTTTACTTTTTGACCCCTGAATACGAACCCAGATCAGCAACGTGTTCTTTACGCACATTAGCCATCTTTTGACTTCAGGAGCAAAGAGGGCTTTTCCCGCCAGTGTAACACTCTTGTTTCAATGAAACACTATGTATATCCTGTAAATAATGTCCAATTAAAATCAAAGATAATCTATAA
>TU311122
ACCCCCCCCTTGCTGGTGAATTTGTGATATTGAATTGGCTCCACTACACTGAACTTGAACTGATTCATCTCTGAATTATCCTACTGTGTTGATTCTGTGAAAACTGTTACATGTTAAAGCCACTGATACAGCGGCAGCAATCTTGTTTACTTTTTGACCCCTGAATACGAACCCAGATCAGCAACGTGTTCTTTACGCACATTAGCCATCTTTTGACTTCAGGAGCAAAGAGGGCTTTTCCCGCCAGTGTAACACTCTTGTTTCAATGAAACACTATGTATATCCTGTAAATAATGTCCAATTAAAATCAAAGATAATCTATAACATGTTGGTGTTCTTTGTGTCCTGTGTCGGCTTCTTTTCGTAAAAGAGTTTGTGAATGTGG
>XM_039792251.1
AAAGGGTGAGTCCCTCCTTCACCAGATCAGGCTTTTCTCTCCGAGCCTTCCGCATCTCtggaaaattgtttttttttataaattagacGAAAATCAAATTTGATTATTCAAAGTGTCTTTTGTGATGACTTCACTTGAAGTGTTTTGAATCAGATCTTGTCTAATAGGCCTAGCCATTCATTTTTCCAATTCATTCTCACTCAGCCTAAATACACTCAAGGATCCGTTTGAGTAAAAGAAGAAATCGTCCGGACATTtgctgtttcttttttctttctttttgtactTACTGAAAGGATTTTACAGGCTTCCTGCCACATCTTTACAAGCATGAAACAGCCCACTGAGATGAGCCATCTCAACATCTCTCCTGAAGAAGACAACAGCAGCTCCAACAGCAATGAGTACACCACATACCAGGACTGTCCTAGGAAGGTCCCACTAGGGGGCCAATTCTCTGACGATGGAGAGAGTCAAAATCTCCCAAAAAAAGTCCTCATTTCACAAaacctaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaacacaataactgTGAGCCTTTTATTGTTTTCCCACAGCACCAGGGCAATGCTTCCTTTGGCATGTCCGTCTTCAACCTGGGCAACGCCATCATGGGCAGCGGCATCCTGGGTCTGTCCTACGCCATGGCCAACACTGGCATCGCCCTATTTGtGATTCTCCTCATGGCCGTCGCCATCTTCTCCTTGTATTCTGTCCACTTGCTGCTGAAGACGGCCAACGAAGGAGGTGCACTGGTGTACGAGCAGCTGGGTTACAAAGCCTTCGGGATGCCGGGGAAACTCGCCGCTTCCATCTCCATCACCATGCAGAACATCGGAGCCATGTCAAGCTACCTCTACATCGTCAAATACGAGCTGCCCATCGTCATTGAATCCTTTATGGGAGTCAGCACTGGAGCATGGTACACTAACGGTGACTACCTGGTGCTGCTGGTGACCCTTGTTATTATCCTGCCCCTGTCACTGCTCAGGAACTTGGGTTACCTTGGTTACACCAGTGGTCTGTCCCTGCTCTGTATGGTGTTCTTTCTGATTGTGGTGATCATCAAGAAGTTCCAGATCCCATGCCCTCTCCCTGTGGACGTCAGCGCTCTGAACGAAACATTAATTAAAGTGCTGAACAACACCTTGTCCCAGCTGAACACCACCGCCGTGGACTACAGCGAGGATGCTTGCACGCCAAAATACTTCGTCTTCAACTCTCAGACTGTCTACGCCGTTCCCATCCTGTCCTTCGCGTTTGTGTGCCACCCTGCCATCCTGCCCATGTACGAGGAGCTTAAAGACCGTTCCCGCAGAAAGATGCAGGGCGTTGCCAATGTGTCCTTCCTGGCCATGTTCATCATGTACCTGCTGGCCGCCCTCTTCGGATATCTGACATTCAACGTGAACGTGGAGCCTGAGCTGCTGCACACCTACTCCAAAATCTACAAGGCTGATGTGGTCCTGCTGATCGTCCGTCTGGCTGTGCTGACAGCCGTCACCCTCACCGTCCCCGTGGTGCTCTTCCCTATTCGTACCTCGGTCAACCACCTCCTGTGCGCTTCTAAGGAATTCAGCTGGATCCGCCACACCATCATCACTGTTGTCCTGCTGGCCGGCACCAACGCCCTGGTCATCTTTGTCCCCACCATCAGGGACATTTTTGGCTTCATCGGTGCCTCTGCTGCTGCAATGCTCATCTTCATCCTGCCCTCGGCTTTCTACATCAAACTGGTCAAGAAGGAGTCCATGAAGTCCGTGCAAAAGATTGGGGCCACCGCCTTCCTGCTGTGCGGTTTTGTGGTCATGATCGGCAGCATGAGCCTCATCATCCTGGACTGGATCCACAACGCCTCATCCAGCCCGGACACACACGGCAACGGGCACTAAAAGGTCCACCTCTCCTGCTGTGGCCTGCCGAAGACCAAGAAGGCTTTCAGCGCTGGACTGCTACAGCCGCGCAAACCAACAAAGATCAACACCTattgtaaaagaaaagaaaaaaaaacatacaaacacaagaaCTCACTTAATGCTCGGCTTTGACTTCCTGAGCGACGAACCATGCCATTCCAAGAGAATGTATCGAACTTTGTACAGTATGCTGTTCTAGGCCACAACGATGGTGTTTtacttgttttctctttttattgtaACTTTTTTTCATTGTCGTTTCATGCTCGTTTTTATTTTGTGATGTTCTTTTGTAGTTATGGTACAgctgaaaacaaatattttgaaGGTGCCTCAAATCAGAGATGACAGCGGAGAGTTCAAAGTGCAGCTCACACTCAGGTGCGGTGTCATGTGTGGCTGTGACCTCAGAGCTCTGCGACAACTAATCCTGCTGAGAAACGTATGTGTGAATCTCCCCGAAGATTGACGAGAGACAACAGACTTGAAAGTTCATCCTCCTCAAAGACAATTAAGTTCCTTccaacatttgttgtttttgttgttgttgtttttttctttgccaaAATTGTATTTGTAAAGCATCTCTGTATATTGAAAAGCACTTAACTGTTCAGCACAAttgtggagaagaaaaaaaacaaggcgTCAGTTTCCACAGGCGAGGCCTACTACACCGCCTTTTCAGTATTCGTACCAAAGGCTTTTGTGACCTTGCTTATAGTGTCAGCTTTCCTTGTAAAACCCAATATAAGTCAACAGAACCTGCCTTTTCAAACCCCGACACTTGGAGCTGCAGAGTAGCTCACAAGAGGACTCTCACAAAACTGTATTTACTCTTTATAACCTGCTGAAGATCTTGTTGGAACAGTGCGTACAGCGATGACACTACTGCTTTGAGAACGGAAGGTCTCCAGTGTCTCCAGTTCCCCTTCTCCCCCATTCGGGGGAGGGGAGaacttaaaaatgtttttctttatggGAGAATACTTTGAATTTGACCACATGCAGTGGTTCTAATATACCTGTTAAACttgcaacaaaaaacaaactaaaaacggTCGCGCAGTTTTCTGCTTTCGAAATGTTTCACAATGAAGAACTTGATTGCTCGATGCGGACTTGTTTCCCCGCCGAGTCGTGAACCTGTCATCTGACAGTGCACTGTGCTTCCAACACTAACTTAACACGTCACCATACTTTTATTGTCCAACATCTATTTATGGAAGACCGTAAAAATCAAtgtaatttaatctattttactatatttatataatattgtatgtatatatatgtatatatctattGAGTTCAACTGTATATACACTTTGTTTGaaccttcctttttttttttttttttttacaataatgcATTGGAGCTGTAAAACAAAAGCGAACCCCACCCCCCCCTTGCTGGTGAATTTGTGATATTGAATTGGCTCCACTACACTGAACTTGAACTGATTCATCTCTGAATTATCCTACTGTGTTGATTCTGTGAAAACTGTTACATGTTAAAGCCACTGATACAGCGGCAGCAATCTTGTTTACTTTTTGACCCCTGAATACGAACCCAGATCAGCAACGTGTTCTTTACGCACATTAGCCATCTTTTGACTTCAGGAGCAAAGAGGGCTTTTCCCGCCAGTGTAACACTCTTGTTTCAATGAAACACTATGTATATCCTGTAAATAATGTCCAATTAAAATCAAAGATAATCTATAA

Function

symbol description
slc38a2 Predicted to enable L-glutamine transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and glutamine transport. Predicted to act upstream of or within amino acid transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in lens; notochord; and solid lens vesicle. Orthologous to human SLC38A2 (solute carrier family 38 member 2).

NR:

description
PREDICTED: sodium-coupled neutral amino acid transporter 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU311121 False 324 lncRNA 0.39 1 21461137 21461460
TU311122 False 385 lncRNA 0.40 1 21461076 21461460
XM_039792251.1 True 3675 mRNA 0.45 16 21461137 21474602

Neighbor

gene id symbol gene type direction distance location
gas2l3 gas2l3 coding downstream 95968 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 159820 21295513 ~ 21301256 (-)
LOC120553384 stk38l coding downstream 167840 21269874 ~ 21293236 (-)
LOC120553569 arntl2,LOC100698791,LOC102799561,LOC102199297,LOC101476868,LOC102299859 coding downstream 199374 21234254 ~ 21261702 (-)
slc13a4 slc13a4 coding downstream 277220 21153201 ~ 21183856 (-)
slc38a4 slc38a4 coding upstream 44023 21518625 ~ 21571113 (-)
LOC120553490 ano4,LOC102780176 coding upstream 209608 21684210 ~ 21753271 (-)
LOC120553085 LOC103357120 coding upstream 341580 21816182 ~ 21827934 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 354409 21829011 ~ 21836596 (-)
apex1 apex1 coding upstream 416008 21890610 ~ 21894722 (-)
G229351 scaf11,LOC102797309 non-coding downstream 7924 21450463 ~ 21453152 (-)
G229296 NA non-coding downstream 196264 21264501 ~ 21264812 (-)
G229248 NA non-coding downstream 261817 21198468 ~ 21199259 (-)
G229235 NA non-coding downstream 398640 21019259 ~ 21062436 (-)
G229172 NA non-coding downstream 593547 20867300 ~ 20867529 (-)
G229390 NA non-coding upstream 167913 21642515 ~ 21642768 (-)
G229392 NA non-coding upstream 181300 21655902 ~ 21656162 (-)
G229413 NA non-coding upstream 206958 21681560 ~ 21682539 (-)
LOC120553093 NA non-coding upstream 302431 21777033 ~ 21777676 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 379781 21854383 ~ 21856289 (-)
ptprz1b NA other downstream 315543 21063691 ~ 21145533 (-)
G229199 NA other downstream 502856 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1106449 20301092 ~ 20354627 (-)
rerg rerg other downstream 1338683 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 1621726 19806814 ~ 19839350 (-)
LOC120553090 NA other upstream 296486 21771088 ~ 21811097 (-)
G229716 NA other upstream 1630158 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1729166 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 2215917 23690519 ~ 23711804 (-)
G229907 NA other upstream 2225095 23699697 ~ 23700198 (-)

Expression


Co-expression Network