G229351 (scaf11,LOC102797309)


Basic Information

Item Value
gene id G229351
gene name scaf11,LOC102797309
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21450463 ~ 21453152 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311129
GCCTATTGTTTCAAAGGAGATTTTTTTGGGAAGTACAGAGCAGAAACAATACAGAAACGAGATGGAGACGAAATTCAAATGTAAACTCCGAGGAAGGAAACCCTTCCATCTTTAAAATCTTATAATGGAGAGGTTTCCTTCTTTCATCTGAAGcctgacaaacacacagcagaTCAGGAAGCAGCTAATTTATTTCACTACTCTCTGGATACTTTGCACAGTTCCTGTTCACCCATTGACATTGAATACACATTCAGGCAGGGGGTGGGGTTTATTTCATTTGATCTGCCTCTCTGAGACCTGTGCCTTACATTACAAACTCACTGCTGATTGGCCATCCCACTTAAGAGTCTCCTCAACCAATCAGGGCCCAGATTACAATCACACTCATCAGATTCCAGCCCTTAACTGGGCCACAGAGATTAATAAAGGCAATGCACTGTTTTTGAAACTAGGCTTTCATCtgaaatattatataataataaaaaaagaaaagaacattgACAATATTTAATTAATAAGCTATGCGATCAGGATGCCATTTAGGAGAAATTCATCGTACCAGCACCCTGGGAGAGGCTCTCCACCACATAAACTGACATCGTTCGCTGAGCGTTGCATCCCCGTGCTCCTTACAGTAGTTCCCAGGTCACATGATCTATGCAAAATAAAGGGCTCTTGCATTACAATTTCTGATTGGGCAATTCTTTTTCtaacaaaatatgaaattctatagaaaaaaaatcttcattcaataaaaggtagagatataaaaaaaaaaaataataataatgttggcTCTCCGTTGTCTTTCAGTTTGGAGGCCAAATTCCAGCCAGAGGAAATTGCACTTAAGCAGCTGAATGGGTCTGTGAGGGCGCTGCCGCGCCATCAGCAGGGCGGGGGTTCACTTCTTGCGGGCGTGCTTGTATTTGTCCACGTAGGCCTTCACCAGGTTGGCCACCTTACTGGAGTTCACCTCACCACTCTTGCTGTGACACaccTTTTCTACCGCTTTGCGGACAATCTCCTTGTACTCGTCCTTTGTGATTTCCTTCTTTTGGTAATAGGGTTTGATGGCATTCTTCACTTCGTTTACAGCTTTCTCTTGGATCTGTTgttaccttttcttttttggagcTATCAGCTTGAGCCTTATAATGCTGGCCGGGCTGAGTTGTAGAGGATGGTAGCACCTGGCTGGGTGCCGACTGGCCATGGGTCGCCACGGCAACACCAGCTTTGGTCGGGGTGGGAAGAAGGCCAGGTTTCCCATAAGCCATCATTGTACTTGCCAT
>TU311131
GCCTATTGTTTCAAAGGAGATTTTTTTGGGAAGTACAGAGCAGAAACAATACAGAAACGAGATGGAGACGAAATTCAAATGTAAACTCCGAGGAAGGAAACCCTTCCATCTTTAAAATCTTATAATGGAGAGGTTTCCTTCTTTCATCTGAAGcctgacaaacacacagcagaTCAGGAAGCAGCTAATTTATTTCACTACTCTCTGGATACTTTGCACAGTTCCTGTTCACCCATTGACATTGAATACACATTCAGGCAGGGGGTGGGGTTTATTTCATTTGATCTGCCTCTCTGAGACCTGTGCCTTACATTACAAACTCACTGCTGATTGGCCATCCCACTTAAGAGTCTCCTCAACCAATCAGGGCCCAGATTACAATCACACTCATCAGATTCCAGCCCTTAACTGGGCCACAGAGATTAATAAAGGCAATGCACTGTTTTTGAAACTAGGCTTTCATCtgaaatattatataataataaaaaaagaaaagaacattgACAATATTTAATTAATAAGCTATGCGATCAGGATGCCATTTAGGAGAAATTCATCGTACCAGCACCCTGGGAGAGGCTCTCCACCACATAAACTGACATCGTTCGCTGAGCGTTGCATCCCCGTGCTCCTTACAGTAGTTCCCAGGTCACATGATCTATGCAAAATAAAGGGCTCTTGCATTACAATTTCTGATTGGGCAATTCTTTTTCtaacaaaatatgaaattctatagaaaaaaaatcttcattcaataaaaggtagagatataaaaaaaaaaaataataataatgttggcTCTCCGTTGTCTTTCAGTTTGGAGGCCAAATTCCAGCCAGAGGAAATTGCACTTAAGCAGCTGAATGGGTCTGTGAGGGCGCTGCCGCGCCATCAGCAGGGCGGGGGTTCACTTCTTGCGGGCGTGCTTGTATTTGTCCACGTAGGCCTTCACCAGGTTGGCCACCTTACTGGAGTTCACCTCACCACTCTTGCTGTGACACaccTTTTCTACCGCTTTGCGGACAATCTCCTTGTACTCGTCCTTTGTGATTTCCTTCTTTTGGTAATAGGGTTTGATGGCATTCTTCACTTCGTTTACAGCTTTCTCTTGGATCTGTTGTTTttttggagcTATCAGCTTGAGCCTTATAATGCTGGCCGGGCTGAGTTGTAGAGGATGGTAGCACCTGGCTGGGTGCCGACTGGCCATGGGTCGCCACGGCAACACCAGCTTTGGTCGGGGTGGGAAGAAGGCCAGGTTTCCCATAAGCCATCATTGTACTTGCCAT

Function

symbol description
scaf11 Predicted to enable metal ion binding activity. Predicted to be involved in spliceosomal complex assembly. Orthologous to human SCAF11 (SR-related CTD associated factor 11).

NR:

description
protein SCAF11 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311129 True 1298 lncRNA 0.44 3 21450463 21453152
TU311131 False 1289 lncRNA 0.44 3 21450463 21453152

Neighbor

gene id symbol gene type direction distance location
gas2l3 gas2l3 coding downstream 85355 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 149207 21295513 ~ 21301256 (-)
LOC120553384 stk38l coding downstream 157227 21269874 ~ 21293236 (-)
LOC120553569 arntl2,LOC100698791,LOC102799561,LOC102199297,LOC101476868,LOC102299859 coding downstream 188761 21234254 ~ 21261702 (-)
slc13a4 slc13a4 coding downstream 266607 21153201 ~ 21183856 (-)
slc38a4 slc38a4 coding upstream 65473 21518625 ~ 21571113 (-)
LOC120553490 ano4,LOC102780176 coding upstream 231058 21684210 ~ 21753271 (-)
LOC120553085 LOC103357120 coding upstream 363030 21816182 ~ 21827934 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 375859 21829011 ~ 21836596 (-)
apex1 apex1 coding upstream 437458 21890610 ~ 21894722 (-)
G229296 NA non-coding downstream 185651 21264501 ~ 21264812 (-)
G229248 NA non-coding downstream 251204 21198468 ~ 21199259 (-)
G229235 NA non-coding downstream 388027 21019259 ~ 21062436 (-)
G229172 NA non-coding downstream 582934 20867300 ~ 20867529 (-)
G229168 NA non-coding downstream 670555 20779683 ~ 20779908 (-)
G229390 NA non-coding upstream 189363 21642515 ~ 21642768 (-)
G229392 NA non-coding upstream 202750 21655902 ~ 21656162 (-)
G229413 NA non-coding upstream 228408 21681560 ~ 21682539 (-)
LOC120553093 NA non-coding upstream 323881 21777033 ~ 21777676 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 401231 21854383 ~ 21856289 (-)
ptprz1b NA other downstream 304930 21063691 ~ 21145533 (-)
G229199 NA other downstream 492243 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1095836 20301092 ~ 20354627 (-)
rerg rerg other downstream 1328070 20066895 ~ 20122393 (-)
etv6 etv6 other downstream 1611113 19806814 ~ 19839350 (-)
slc38a2 slc38a2 other upstream 7924 21461076 ~ 21474602 (-)
LOC120553090 NA other upstream 317936 21771088 ~ 21811097 (-)
G229716 NA other upstream 1651608 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1750616 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 2237367 23690519 ~ 23711804 (-)

Expression


Co-expression Network