LOC120553090


Basic Information

Item Value
gene id LOC120553090
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21771088 ~ 21811097 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311312
TTTAAATGtcacagttgtgaaagctgtgtgacatactttgtaaaaaaagaacaagtTACTTCAGAGAAATAGGGGAAATTAGATCACTGGGTGTGTTGTACAGACTTTGCTCCCACACGACTGGAAGGGACGACATTCATCGTCATCATTAAGGAGGTGTGGCAGTTTATTGAGTGGGAAAAAGGGCTGTTGTGGAATTTGAGCTGGCATTCAAGGTTCATCCAACGCAGGAGGTCAAAATGAAGAGTCTGGTTGGGTATTGTGTGCtcattttggcatttcttttgaACTGCACAGAACAGACTAAGAAACGCCAGAAGGGGCTTTCTTCTCAAGGAACAGACTGCACACAGATAAAGGCTCTCATGCCACAAGCATCCAGTGGCGTTTATGTAATCCAGCCTCACGGAGTCAGCACCCCATTTAAGGTGTACTGTGAGATGAGGCCAGATGGAGGCTGGACGGTGTTTCAGAGGCGCAGTGGCAGAGCGGTTTCCTTCAACAGGAAATGGGCCGCATATAAAAAGGGTTTTGGAAACTTGACACAGGACCACTGGCTCGGTCTGAAGAAGCTTTTCTCTCTGACCAAGACCAAGAAGTGGACCATGAGGGTCGACCTGTGGGACCACGAAGAGGGCACTGCTTTCGCCGAGTACAGACACTTCAGATTGGGCAATGAAAAAGCAGCTTTTAAACTCCATGTTGGGAAATACCAAGGAAATGCAGGTGATGCCATCCGTGGTGCCTATTCGGGCATCGACCAGAATGGCTACGGCTTCAGCACCACCGATCGCGACAATGACGGCTGCTCCCCGTGCATCTTTGGTGACATCGCTGAAACGAAATGTGCCAATTCAGACGGCG
>TU311319
GCCAGATGGGAAAAGTCAGAGAAATGAGCCTGTAAACACTGCTGGGCATATTTTAGCGCAGCAGAGTTTAAATGtcacagttgtgaaagctgtgtgacatactttgtaaaaaaagaacaagtTACTTCAGAGAAATAGGGGAAATTAGATCACTGGGTGTGTTGTACAGACTTTGCTCCCACACGACTGGAAGGGACGACATTCATCGTCATCATTAAGGAGGTGTGGCAGTTTATTGAGTGGGAAAAAGGGCTGTTGTGGAATTTGAGCTGGCATTCAAGGTTCATCCAACGCAGGAGGTCAAAATGAAGAGTCTGGTTGGGTATTGTGTGCtcattttggcatttcttttgaACTGCACAGAACAGACTAAGAAACGCCAGAAGGGGCTTTCTTCTCAAGGAACAGACTGCACACAGATAAAGGCTCTCATGCCACAAGCATCCAGTGGCGTTTATGTAATCCAGCCTCACGGAGTCAGCACCCCATTTAAGGTGTACTGTGAGATGAGGCCAGATGGAGGCTGGACGGTGTTTCAGAGGCGCAGTGGCAGAGCGGTTTCCTTCAACAGGAAATGGGCCGCATATAAAAAGGGTTTTGGAAACTTGACACAGGACCACTGGCTCGGTCTGAAGAAGCTTTTCTCTCTGACCAAGACCAAGAAGTGGACCATGAGGGTCGACCTGTGGGACCACGAAGAGGGCACTGCTTTCGCCGAGTACAGACACTTCAGATTGGGCAATGAAAAAGCAGCTTTTAAACTCCATGTTGGGAAATACCAAGGAAATGCAGGTGATGCCATCCGTGGTGCCTATTCGGGCATCGACCAGAATGGCTACGGCTTCAGCACCACCGATCGCGACAATGACGGCTGCTCCCCGT
>XM_039791171.1
CAGAGAAATGAGCCTGTAAACACTGCTGGGCATATTTTAGCGCAGCAGAGTTTAAATGtcacagttgtgaaagctgtgtgacatactttgtaaaaaaagaacaagtTACTTCAGAGAAATAGGGGAAATTAGATCACTGGGTGTGTTGTACAGACTTTGCTCCCACACGACTGGAAGGGACGACATTCATCGTCATCATTAAGGAGGTGTGGCAGTTTATTGAGTGGGAAAAAGGGCTGTTGTGGAATTTGAGCTGGCATTCAAGGTTCATCCAACGCAGGAGGTCAAAATGAAGAGTCTGGTTGGGTATTGTGTGCtcattttggcatttcttttgaACTGCACAGAACAGACTAAGAAACGCCAGAAGGGGCTTTCTTCTCAAGTTGTGCCAACCTCAGGAACAGACTGCACACAGATAAAGGCTCTCATGCCACAAGCATCCAGTGGCGTTTATGTAATCCAGCCTCACGGAGTCAGCACCCCATTTAAGGTGTACTGTGAGATGAGGCCAGATGGAGGCTGGACGGTGTTTCAGAGGCGCAGTGGCAGAGCGGTTTCCTTCAACAGGAAATGGGCCGCATATAAAAAGGGTTTTGGAAACTTGACACAGGACCACTGGCTCGGTCTGAAGAAGCTTTTCTCTCTGACCAAGACCAAGAAGTGGACCATGAGGGTCGACCTGTGGGACCACGAAGAGGGCACTGCTTTCGCCGAGTACAGACACTTCAGATTGGGCAATGAAAAAGCAGCTTTTAAACTCCATGTTGGGAAATACCAAGGAAATGCAGGGGATGCCATCCGTGGTGCCTATTCGGGCATCGACCAGAATGGCTACGGCTTCAGCACCATCGATCGCGACAATGACGGCTGCTCCCCGTGCATCTTTGGTGACATCGCTGAAACGAAATGTACCAATTCAGACGGCGGCGGTTGGTGGTACAGCCGCTGTGGCTCTGCCAGTCTGAACGGCGACTGGCATCCTGCAGGTGATCACATCGGCTGGGCGTCAGGCCTCTACTGGCATACCTGGAAGAATCCTGCGCCTTACTCCTTGAAGGCCACCAGAATGATGATCAAGTCTGTCTGAGAGGAGCCACATTACTAGCTTTTGTTGTAACACAGCATTACATTTTAGCCATTTCAAAAATgacttgttttttaaatatgcaaatcaatttgttttttgttttagataCTGGTGGTACTAACACTTCCAGATTGTTTCTGCCTTAAGAGATTGATTCTTCTTTATATTATCCTAATTTCTTTATGCCAGGAGTCTGAGGTCACCATTGAGGTGTCccttaaataacaaaaacattcaaatgaaaactgATGGATGCCCATTATTTGATTTACAGGCATCCCTAAAAGTCTTGTATTCTTACAATTGGTTCCTACATTAATCAACCAAACATCTGaactttataaaaatatatttttaaaactttta
>XM_039791173.1
AATGAGCCTGTAAACACTGCTGGGCATATTTTAGCGCAGCAGAGTTTAAATGtcacagttgtgaaagctgtgtgacatactttgtaaaaaaagaacaagtTACTTCAGAGAAATAGGGGAAATTAGATCACTGGGTGTGTTGTACAGACTTTGCTCCCACACGACTGGAAGGGACGACATTCATCGTCATCATTAAGGAGGTGTGGCAGTTTATTGAGTGGGAAAAAGGGCTGTTGTGGAATTTGAGCTGGCATTCAAGGTTCATCCAACGCAGGAGGTCAAAATGAAGAGTCTGGTTGGGTATTGTGTGCtcattttggcatttcttttgaACTGCACAGAACAGACTAAGAAACGCCAGAAGGGGCTTTCTTCTCAAGGAACAGACTGCACACAGATAAAGGCTCTCATGCCACAAGCATCCAGTGGCGTTTATGTAATCCAGCCTCACGGAGTCAGCACCCCATTTAAGGTGTACTGTGAGATGAGGCCAGATGGAGGCTGGACGGTGTTTCAGAGGCGCAGTGGCAGAGCGGTTTCCTTCAACAGGAAATGGGCCGCATATAAAAAGGGTTTTGGAAACTTGACACAGGACCACTGGCTCGGTCTGAAGAAGCTTTTCTCTCTGACCAAGACCAAGAAGTGGACCATGAGGGTCGACCTGTGGGACCACGAAGAGGGCACTGCTTTCGCCGAGTACAGACACTTCAGATTGGGCAATGAAAAAGCAGCTTTTAAACTCCATGTTGGGAAATACCAAGGAAATGCAGGGGATGCCATCCGTGGTGCCTATTCGGGCATCGACCAGAATGGCTACGGCTTCAGCACCATCGATCGCGACAATGACGGCTGCTCCCCGTGCATCTTTGGTGACATCGCTGAAACGAAATGTACCAATTCAGACGGCGGCGGTTGGTGGTACAGCCGCTGTGGCTCTGCCAGTCTGAACGGCGACTGGCATCCTGCAGGTGATCACATCGGCTGGGCGTCAGGCCTCTACTGGCATACCTGGAAGAATCCTGCGCCTTACTCCTTGAAGGCCACCAGAATGATGATCAAGTCTGTCTGAGAGGAGCCACATTACTAGCTTTTGTTGTAACACAGCATTACATTTTAGCCATTTCAAAAATgacttgttttttaaatatgcaaatcaatttgttttttgttttagataCTGGTGGTACTAACACTTCCAGATTGTTTCTGCCTTAAGAGATTGATTCTTCTTTATATTATCCTAATTTCTTTATGCCAGGAGTCTGAGGTCACCATTGAGGTGTCccttaaataacaaaaacattcaaatgaaaactgATGGATGCCCATTATTTGATTTACAGGCATCCCTAAAAGTCTTGTATTCTTACAATTGGTTCCTACATTAATCAACCAAACATCTGaactttataaaaatatatttttaaaactttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311312 False 864 TUCP 0.48 7 21771088 21811031
TU311319 False 882 TUCP 0.48 7 21771136 21811097
XM_039791171.1 True 1456 mRNA 0.45 7 21804418 21811081
XM_039791173.1 False 1435 mRNA 0.45 7 21804418 21811075

Neighbor

gene id symbol gene type direction distance location
LOC120553490 ano4,LOC102780176 coding downstream 17817 21684210 ~ 21753271 (-)
slc38a4 slc38a4 coding downstream 199975 21518625 ~ 21571113 (-)
gas2l3 gas2l3 coding downstream 405980 21335537 ~ 21365108 (-)
med21 med21,LOC102798687 coding downstream 469832 21295513 ~ 21301256 (-)
LOC120553384 stk38l coding downstream 477852 21269874 ~ 21293236 (-)
LOC120553085 LOC103357120 coding upstream 5085 21816182 ~ 21827934 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding upstream 17914 21829011 ~ 21836596 (-)
apex1 apex1 coding upstream 79513 21890610 ~ 21894722 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding upstream 117142 21928239 ~ 21935396 (-)
LOC120553803 LOC103357126 coding upstream 126241 21937338 ~ 21945575 (-)
G229413 NA non-coding downstream 88549 21681560 ~ 21682539 (-)
G229392 NA non-coding downstream 114926 21655902 ~ 21656162 (-)
G229390 NA non-coding downstream 128320 21642515 ~ 21642768 (-)
G229351 scaf11,LOC102797309 non-coding downstream 317936 21450463 ~ 21453152 (-)
G229296 NA non-coding downstream 506276 21264501 ~ 21264812 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding upstream 43286 21854383 ~ 21856289 (-)
G229539 NA non-coding upstream 67175 21878272 ~ 21878705 (-)
G229541 NA non-coding upstream 68807 21879904 ~ 21880220 (-)
G229546 NA non-coding upstream 101308 21912405 ~ 21947509 (-)
G229558 NA non-coding upstream 509176 22320273 ~ 22320528 (-)
slc38a2 slc38a2 other downstream 296486 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 625555 21063691 ~ 21145533 (-)
G229199 NA other downstream 812868 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1416461 20301092 ~ 20354627 (-)
rerg rerg other downstream 1648695 20066895 ~ 20122393 (-)
G229716 NA other upstream 1293663 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1392671 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 1879422 23690519 ~ 23711804 (-)
G229907 NA other upstream 1888600 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 2047122 23858219 ~ 23863974 (-)

Expression


Co-expression Network