G229546


Basic Information

Item Value
gene id G229546
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21912405 ~ 21947509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311398
CTCGAGCTGTATCCAGCAAAGATGGCACCAGGCGCAACTCCCGTGACGGAGTCTGAAAAAGaccttaaaatgtttaaatctaAAGAAGTTTCGATATCTTTACCGAAACACTCCTACTGGTATGACTTTTGGATGTTCGTGCTCTTTGACATCGCATTTTTCCTCATCATGTATTTCATAGTCCCGTAGAAAGGGTTGTCTCCTGGACTCTGGAGTCTGAAGACGGAGTGTTGGTCCTGCCCTGCTGTTAGGAATGCTAACCCAGCTTTGACTGAATTTAACACCACTTTATTGGATATCACATCCCAGGTTTCTGCGCCTTAGACCATGGAACCGCTTCATAAATGTGGCATCCTGCTTTGACATCAGAGATTTGTCCCACAGAGCTCCTTCCCTCTGTGACCTGTTGCTGTGGACTGTCTTTCTGCAGGGATGCATTCACGTTGTTGCCGTGGGAAGGAGATAAACtatataattcttttttttattaaaagtgaCAATGGCCATCTTATGATCCAGTGTGGGGGCTGTGAAGTGGAGAAACAAGATTTTACTTGCACACCATATATTATATTGTGGAATTTAATTCCAGCACATTAAAATGTTGAAAGTTTGCACatggtaaataaaatgttttacctACCTTCTAAA
>TU311399
atggtttttattttattttgaaggaccATATGACGCAGGAATTGTGTGTGTTCTCTTCCGGGAAGCTCGAGCTGTATCCAGCAAAGATGGCACCAGGCGCAACTCCCGTGACGGAGTCTGAAAAAGaccttaaaatgtttaaatctaAAGAAGTTTCGATATCTTTACCGAAACACTCCTACTGGTATGACTTTTGGATGTTCGTGCTCTTTGACATCGCATTTTTCCTCATCATGTATTTCATAGTCCCGTAGAAAGGGTTGTCTCCTGGACTCTGGAGTCTGAAGACGGAGTGTTGGTCCTGCCCTGCTGTTAGGAATGCTAACCCAGCTTTGACTGAATTTAACACCACTTTATTGGATATCACATCCCAGGTTTCTGCGCCTTAGACCATGGAACCGCTTCATAAATGTGGCATCCTGCTTTGACATCAGAGATTTGTCCCACAGAGCTCCTTCCCTCTGTGACCTGTTGCTGTGGACTGTCTTTCTGCAGGGATGCATTCACGTTGTTGCCGTGGGAAGGAGATAAACtatataattcttttttttattaaaagtgaCAATGGCCATCTTATGATCCAGTGTGGGGGCTGTGAAGTGGAGAAACAAGATTTTACTTGCACACCATATATTATATTGTGGAATTTAATTCCAGCACATTAAAATGTTGAAAGTTTGCACatggtaaataaaatgttttacctACCTTCTAAA
>TU311400
CTCGAGCTGTATCCAGCAAAGATGGCACCAGGCGCAACTCCCGTGACGGAGTCTGAAAAAGaccttaaaatgtttaaatctaAAGAAGTTTCGATATCTTTACCGAAACACTCCTACTGGTATGACTTTTGGATGTTCGTGCTCTTTGACATCGCATTTTTCCTCATCATGTATTTCATAGTCCCGTAGAAAGGGTTGTCTCCTGGACTCTGGAGTCTGAAGACGGAGTGTTGGTCCTGCCCTGCTGTTAGGAATGCTAACCCAGCTTTGACTGAATTTAACACCACTTTATTGGATATCACATCCCAGGTTTCTGCGCCTTAGACCATGGAACCGCTTCATAAATGTGGCATCCTGCTTTGACATCAGAGATTTGTCCCACAGAGCTCCTTCCCTCTGTGACCTGTTGCTGTGGACTGTCTTTCTGCAGGGATGCATTCACGTTGTTGCCGTGGGAAGGAGATAAACtatataattcttttttttattaaaagtgaCAATGGCCATCTTATGATCCAGTGTGGGGGCTGTGAAGTGGAGAAACAAGATTTTACTTGCACACCATATATTATATTGTGGAATTTAATTCCAGCACATTAAAATGTTGAAAGTTTGCACatggtaaataaaatgttttacctACaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU311398 False 651 lncRNA 0.42 2 21945919 21947444
TU311399 True 716 lncRNA 0.42 2 21945919 21947509
TU311400 False 658 lncRNA 0.41 3 21912405 21947444

Neighbor

gene id symbol gene type direction distance location
apex1 apex1 coding downstream 17683 21890610 ~ 21894722 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding downstream 75809 21829011 ~ 21836596 (-)
LOC120553085 LOC103357120 coding downstream 84471 21816182 ~ 21827934 (-)
LOC120553490 ano4,LOC102780176 coding downstream 159134 21684210 ~ 21753271 (-)
slc38a4 slc38a4 coding downstream 341292 21518625 ~ 21571113 (-)
nav3 nav3 coding upstream 1227 21948736 ~ 22179107 (-)
zdhhc17 zdhhc17,LOC102798393 coding upstream 586745 22534254 ~ 22573905 (-)
LOC120553033 LOC103354931,LOC102080527,LOC102775588,LOC101467455 coding upstream 928414 22875923 ~ 22893181 (-)
LOC120553034 NA coding upstream 972673 22920182 ~ 22942119 (-)
LOC120553037 NA coding upstream 1145310 23092819 ~ 23116421 (-)
G229541 NA non-coding downstream 32185 21879904 ~ 21880220 (-)
G229539 NA non-coding downstream 33700 21878272 ~ 21878705 (-)
G229527 LOC108228952,LOC107098074,LOC105922964,LOC106609550,LOC103375704 non-coding downstream 56116 21854383 ~ 21856289 (-)
LOC120553093 NA non-coding downstream 134729 21777033 ~ 21777676 (-)
G229413 NA non-coding downstream 229866 21681560 ~ 21682539 (-)
G229558 NA non-coding upstream 372764 22320273 ~ 22320528 (-)
LOC120553112 NA non-coding upstream 434256 22381765 ~ 22449387 (-)
G229576 NA non-coding upstream 508680 22456189 ~ 22456445 (-)
G229589 csrp2 non-coding upstream 567481 22514990 ~ 22531298 (-)
G229605 NA non-coding upstream 709424 22656933 ~ 22737978 (-)
LOC120553090 NA other downstream 101308 21771088 ~ 21811097 (-)
slc38a2 slc38a2 other downstream 437803 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 766872 21063691 ~ 21145533 (-)
G229199 NA other downstream 954185 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 1557778 20301092 ~ 20354627 (-)
G229716 NA other upstream 1157251 23104760 ~ 23239573 (-)
glipr1a NA other upstream 1256259 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 1743010 23690519 ~ 23711804 (-)
G229907 NA other upstream 1752188 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 1910710 23858219 ~ 23863974 (-)

Expression


Co-expression Network