G229589 (csrp2)


Basic Information

Item Value
gene id G229589
gene name csrp2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22514990 ~ 22531298 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311452
cggaatgctgtgcggactagccagaccctcctccgcagcgctgtggaggaaggtctggcgaggTCTGCGAGACTACAGCTTGGTAAAAACCAGCATAAAGTTGCAGGAACACATTCTCTCACAGTCTGTGGTATAAGATCACAAGGCACACAGCCTATGTGTACACTCTGCGACAGTGTTGTCACGACGATCCACAAATTCGCACCTGAGCCGAGTCATCATTTTTGCAACGTGATTGAACTGGTGAAAGCCAAAATAGTCGAGCTTTGCTAATGTCCTGGCAGATGCCTCAGTGTtaatgctgacattagcatgaCGTTAGcatgctcacagtgacaatgctTACATGCTACACAGCTAATCAGGTATAAGTCTTACATCCACAACATCCACAATCTGTGTTGCAGAACTACAGGCTGAGTGACTATAGACCCATGCTGTCAGTGATCACACAGAATACTTAACACGTTACACATTACCGGTTGTTGAAGTGACAAAATATGTTGCTGCTGGATGCCTCTGTAGCAGATTCctctttttggatgtttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaataatgtatctgaagtctcttttatataggccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtatcttttatatagaccttagtggtcccctaatactgtatctgaagtatcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctctttcccaaaattcagccttggtgcagaattccagccactagagccagtcccacaatgagatttccttaggatgtgccatttctgtgtctgtagctttaaatgcgagaggggagagggggggcaaggtggagggtgggggtgtggccttgaccagcttgcggccacggttgtagctctatttcctcatgggcgggccaaattctctggggagCTGTGggcggcgggcaaagcagagaaaggggaggtaacctttccccttatgacatcataaagggaagattcggcggagcaggatacccagggctcggtttacacctatcgccatttctagccactgggggaccataggcaggctgggggaatattaatgttaaaaaaacctcataaagtgaaatgttcatgccatgggacctgtAAATCTACTCTAGCTCTGCCAATACATGTGTTGGCCAATGCAAATGTGTAGATCACCTTCCATTATTCCTGGCTCTCTGTTAAAACTCAACAGAACCAACCAGTCGTACTGCTCTAATGAAATCCTGCACATATTTTGTTCCATGTCAGATGTTTTATCTCACCTTTGCAGTAGATTTCTCCATCTTTCTCAGTCTGCGTGGTCGACTCCAGGCTCTTGCCACATTTTGCACAGCGGAAGCAGTTCTTATGCCACGGCTTGCCTGCCCCCATGATCTTCTCCGCTGCATAGACAGAGTCTCCACACCGGCCACATTTGTCTGAACCTCCAAACTTCTGGGCAAATTTGGATGGGTTGGGGTTGGTGGTtggtctgtgagtctgtgtcTCTTCGTGTTTGATTCCCAGCCGCTCTCCTCGGTCCATGTTGAGCGTCCCTGCCCCCTGACCGTAGCCGTAGCCTTTAGGGCCGTACTTCTTCCCGTAGCATGACTTGCAGTAGATCTCCTGGTCATGGATAGCCAGTGTGGTGCTGTCTAAGCCTTTCCTGCAGAccaTGCAGAGAAAACAGCATTTGTGGAAACTCTTCCcgtcacactgcacttcctcAGCGTGGTACACTGTCCCACGGCATGCTCCACACTTGTTGCCTCCTCCCCAGTTTGGCATTGTGCTTGGTTCTAAAAAAAGCAGGTATAGGTCTAGATGCTAAAATGACTCGGCTCCAGCTCAAGTGTTCACTGTGTATCCAGACAACTCTCCAGCTCCTCAGCAGACTTTACTACACTGAC

Function

symbol description
csrp2 Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in muscle tissue development and sarcomere organization. Predicted to be active in Z disc and nucleus. Orthologous to human CSRP2 (cysteine and glycine rich protein 2).

NR:

description
PREDICTED: cysteine and glycine-rich protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311452 True 2211 lncRNA 0.47 5 22514990 22531298

Neighbor

gene id symbol gene type direction distance location
nav3 nav3 coding downstream 335883 21948736 ~ 22179107 (-)
LOC120553803 LOC103357126 coding downstream 569415 21937338 ~ 21945575 (-)
si:ch211-214j24.10 LOC103357125,LOC104922658 coding downstream 579594 21928239 ~ 21935396 (-)
apex1 apex1 coding downstream 620268 21890610 ~ 21894722 (-)
selenoo2 LOC106935628,LOC103357121,LOC107081058 coding downstream 678394 21829011 ~ 21836596 (-)
zdhhc17 zdhhc17,LOC102798393 coding upstream 2956 22534254 ~ 22573905 (-)
LOC120553033 LOC103354931,LOC102080527,LOC102775588,LOC101467455 coding upstream 344625 22875923 ~ 22893181 (-)
LOC120553034 NA coding upstream 388884 22920182 ~ 22942119 (-)
LOC120553037 NA coding upstream 561521 23092819 ~ 23116421 (-)
LOC120553577 NA coding upstream 645888 23177186 ~ 23187762 (-)
G229576 NA non-coding downstream 58545 22456189 ~ 22456445 (-)
LOC120553112 NA non-coding downstream 65603 22381765 ~ 22449387 (-)
G229558 NA non-coding downstream 194462 22320273 ~ 22320528 (-)
G229546 NA non-coding downstream 567481 21912405 ~ 21947509 (-)
G229541 NA non-coding downstream 634770 21879904 ~ 21880220 (-)
G229605 NA non-coding upstream 125635 22656933 ~ 22737978 (-)
G229608 NA non-coding upstream 132593 22663891 ~ 22665227 (-)
G229609 osbpl8 non-coding upstream 135395 22666693 ~ 22669268 (-)
G229610 NA non-coding upstream 146552 22677850 ~ 22678544 (-)
G229616 NA non-coding upstream 210076 22741374 ~ 22745099 (-)
LOC120553090 NA other downstream 703893 21771088 ~ 21811097 (-)
slc38a2 slc38a2 other downstream 1040388 21461076 ~ 21474602 (-)
ptprz1b NA other downstream 1369457 21063691 ~ 21145533 (-)
G229199 NA other downstream 1556770 20957657 ~ 20958220 (-)
cdk17 LOC104930593 other downstream 2160363 20301092 ~ 20354627 (-)
G229716 NA other upstream 573462 23104760 ~ 23239573 (-)
glipr1a NA other upstream 672470 23203768 ~ 23210497 (-)
LOC120553170 NA other upstream 1159221 23690519 ~ 23711804 (-)
G229907 NA other upstream 1168399 23699697 ~ 23700198 (-)
LOC120553046 NA other upstream 1326921 23858219 ~ 23863974 (-)

Expression


Co-expression Network