Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120553170 |
| gene name | NA |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 23690519 ~ 23711804 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| id | description |
|---|---|
| ko03440 | Homologous recombination |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU311825 | True | 526 | TUCP | 0.52 | 3 | 23692021 | 23711795 |
| XR_005638124.1 | False | 480 | lncRNA | 0.56 | 3 | 23690519 | 23711804 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cbll1 | cbll1 | coding | downstream | 6451 | 23677168 ~ 23684068 (-) |
| slc26a5 | NA | coding | downstream | 73443 | 23594352 ~ 23617076 (-) |
| dnajc2 | dnajc2 | coding | downstream | 101759 | 23562160 ~ 23588760 (-) |
| phax | NA | coding | downstream | 158712 | 23529757 ~ 23531807 (-) |
| cmah | LOC101476433,LOC102306063,LOC100691852,LOC101466628,LOC102209249,LOC102786627,LOC103459632 | coding | downstream | 414976 | 23229083 ~ 23275543 (-) |
| sbf1 | sbf1 | coding | upstream | 6535 | 23718339 ~ 23809346 (-) |
| glt8d2 | glt8d2 | coding | upstream | 156352 | 23868156 ~ 23885592 (-) |
| net1 | net1,LOC104963784,LOC103383002,LOC107560732 | coding | upstream | 354605 | 24066409 ~ 24109573 (-) |
| podxl | podxl | coding | upstream | 544979 | 24256783 ~ 24284709 (-) |
| LOC120553465 | nfyb | coding | upstream | 653534 | 24365338 ~ 24375224 (-) |
| LOC120553168 | NA | non-coding | downstream | 49015 | 23623580 ~ 23641504 (-) |
| G229872 | pmpcb | non-coding | downstream | 130177 | 23538248 ~ 23560342 (-) |
| G229867 | NA | non-coding | downstream | 162980 | 23527105 ~ 23527539 (-) |
| G229802 | NA | non-coding | downstream | 276761 | 23413116 ~ 23413758 (-) |
| G229774 | NA | non-coding | downstream | 377433 | 23298709 ~ 23313086 (-) |
| G229909 | NA | non-coding | upstream | 1652 | 23713456 ~ 23713677 (-) |
| G229952 | NA | non-coding | upstream | 234693 | 23946497 ~ 23948780 (-) |
| G229987 | NA | non-coding | upstream | 368723 | 24080527 ~ 24081153 (-) |
| LOC120553435 | NA | non-coding | upstream | 405928 | 24117732 ~ 24202125 (-) |
| G230067 | NA | non-coding | upstream | 492226 | 24204030 ~ 24225411 (-) |
| G229716 | NA | other | downstream | 450946 | 23104760 ~ 23239573 (-) |
| glipr1a | NA | other | downstream | 480022 | 23203768 ~ 23210497 (-) |
| LOC120553090 | NA | other | downstream | 1879422 | 21771088 ~ 21811097 (-) |
| slc38a2 | slc38a2 | other | downstream | 2215917 | 21461076 ~ 21474602 (-) |
| ptprz1b | NA | other | downstream | 2544986 | 21063691 ~ 21145533 (-) |
| LOC120553046 | NA | other | upstream | 146415 | 23858219 ~ 23863974 (-) |
| G229950 | gdi2,LOC100708443,LOC102215003 | other | upstream | 196752 | 23908556 ~ 23914692 (-) |
| sult4a1 | sult4a1,LOC102784496 | other | upstream | 1479457 | 25191261 ~ 25217693 (-) |
| LOC120553115 | NA | other | upstream | 1883774 | 25595578 ~ 25601380 (-) |
| mkrn1 | mkrn1 | other | upstream | 2459516 | 26171320 ~ 26196510 (-) |
