LOC120553046


Basic Information

Item Value
gene id LOC120553046
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 23858219 ~ 23863974 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311901
TAATGCCAGAGCCTGAAAGTGATGTAACTTATGTAGTATCCTAAAGGAAATGAATTCGGCACCAAGCCAAACATCTGCGCTGGACTGTCAAAAGATTCCATATTACTAAAAAGGGCATTTATTGACATTTTGACTCTGTCACAGCACAAAATGACTACACTACATCTGCTGATAGGACGGATCGATACCACTGACTCCATGTTTACTTCATCAGCTCCTGACATTTCAGTCTTTCGGGCAAAAACACCTGCGTGCTTAGGTCGAGGCAAACTTTAGTGCAAGTCAAATGAGGCTCAGTTGGTCCTAACGCGTGCCAAGACAATATTTTCCACACCAACATCAGCCTGTGGAACCGTTATGCTGATTATATGAACGCCTGTGGAAAGTTCCCAGCAGGGCAGCTTTATATGGGGAATGGAACCACTACAAGTGGAATTACAAATCCTGCTATACTCCAAGTTGCTTTAGTCTTGTCTTTTTAAATTGTGATTCAAACGCTCAATGGTCTTTTAAGCtcccaacgtctccttcaaGGCAGcactgcgaccgttgacttcaaagaacctaaccctaaccataaccatagcctaatcctagtgccttccagacagcactgcctggaaggagatgttgggggcttaaaacacagataaacgaTTCAAACATtaatttaatcatttatttaatcATCTCAGTGAG
>XM_039791102.1
CATGCTTTACAGTAAAAGAAACTGAAAGTCAGAAAACTCAGAGCAACAGAAAGCACTGCTGCAGTCTGgacaagtctctctctctctctttctctccaaaCAACTTCAGGTGGACGGTACAACAGATGCTCTGAGTACAAacaTGGCAACAGCCAGCAGTCTCCTCTctgaagatcagtttctgtgcttcatctgtctggatgtgttcactgatccAGTCACCATACGATGTGGACACAACTTCTGCAAGAATTGCATCACAGAACACTTTAACGTTAATGTCCAGAGACAGTGTCCCATGTGTAAAGAACTTTTTGACAGAAGACCTGAACTTCGGGTCAACACTTTTATATCCGAGATGGTTGCTAAGTTCAGGCAGTCCGTTCAAAAGAAGACCTGCAGCAGTCCAGAGGAGCAACATGCCAACACAGGAGAAGTTCTCTGTGACGTCTGCACTGGAACCAAAGCGAAGGCCCTAAAGTCCTGTCTGGTGTGTCTGGTCTCCTACTGTGAAGCTCATCTGGAGCTTCACCAGAAAGTCACAGTTATGACAAGACATAAGCTGATTGATGCTGTGGAGAACCTGGAAAGCAGAATGTGTAAGAGGCATGATAGACCACTGGAGCTGTTTTGTAAGACTgaccagatgtgtgtgtgtcagttctGCGCCGAGTCAAGTCACAAGCTTCATCTTATTGTTCCTCTGTTAGAAGAATATAAAGGAAAGAAAGCTGAGCTGGGAAAGACAGAGGCCGGAGTTCAGCAGATGATCCGGGAGAGACAGCTGAAGATTCAGGAGCTCAAACAGTCAGTCAAGCTCAGCCAGGAAGACGCCGACAAAGAGACAGCTGCCAGCGTGCAGGTCTTCACTTCTCTGATAACGTCTGTTGAGAGAAGTCTGGCTGAGCTCATTGACGTATTTACAGAGAAGCACCAAACGATAGAGAAACGGACCGAAGGCTTCATCAAAGAGCTGGAAGAGGAAATCGCTGAGTTGAAGAAGAGAAGCTCAGAGCTGGAGCAGCTTTCACGTACTAAAGACCACCTACAACTCCTCCAAAGCTTCCCGTCTTTGAACCCTGCTCCGCCCACCAAAGACTGGACAGAGGTCAGAGTTCACTCATCATATGAGGGGACGATGAGGAGAGCTTTGGCtcagctggaggagacactCGGCAAAGAGACGAAGAAGCTGTGCGGTGTTGTCGAGCTGAAGAGGGTTCGGCAGTTTGCGGTGGACGTGACTCTTGATCCCGAAACAGCCAATCTATATCTTATCCTGTCTGATGATGGGAAGCAAGTCAGGCTTGGTGATAAAAAACAGAATCTTCTAGACAACCCAAAGAGGCTGTCTTGTAATTCTGTCTTAGGAAAGCAAAGTTTTTCTTCAGGAAGATTTTACTATGAAGTTCAAGTCAAAGGGGAGACTGCCTGGGCTTTAGGAGTGGCCAGAGAGACAATCAACAGGAAGAAAATCTTCTTATCATTGTGCCCTGTGAACGGCTTCTGGACCGTGTGCTCCAGTGTTGGAAATCAGTACAAAGCTCTCGCTGACCCTTCAATCCCTCTCGTTCTGAAGTCTCGGCCTCAGcaggtgggggtgtttgtggattacgaggagggtctggtctccttttatgacGTAGATGCTGCAGCTCTCATCTACTCCTTCACTGGCTGTAACTTCACTGAGAAGCTCTACCCATATTTTAAACACTGCGATTATGATGATGGTATGAACTCAACTCCCCTAATCATTTGTTCTGTCAATCACAGTGGTTAGACTAACCGTAGCAGGAATAATTGGCATGTGAGTGACCTCAATTGCTTTCTTTATATGTTGAGATTTttgcgtttttttttaatttgtattttggtTTCTCATTACTGCAGAAATTTCACAATTTGCCCATTATTGTAAGTGTTTCAATGGGTTTTCCAACctgcaaaaaaaagaattctcaAGTAAATATTGCATTCCTTTAAACTGTACATTTATAAACTGTAAAACTCTTCAAGTGCATTACAGAATCCCTAAAGGGTACCTTTGTCTTCCGAGGGTTAGTGCACTGGGTTACACTTTAcctgaaggtatctacataagagtgacatgacactgtcatgaacgtgtcataaacattataaacaagtcaaacgtttatgacattaCACATCtttagataccttcaagtaaagtgttactgtGCACTGTTGGTTCTGCTCCACTTGGAGGCGCCACTtactttaatttctttttctgtAAAAGCAAAAGTGTTTTAAACTGCTATATAAGTAAAGGCCATCATTACTGTTATTTGACCTGTTTTTGGTGATGTAACATTTTTCAGTAACTATTGTAGTTTTTGTAATGAAATcagtatatttatgtaaatgaTCAACTACACTGTGAGTCCCATTCATCACCAGTGGAGATATTTGAGGAATATTCTCTTGCTGACTTGTTCCTAATCATGTGAGAGAGCAATTATTCCTGGCATATAGATATTTTGTAGTTGAGTatgggttagggggttagggttaggggttagggttgaGTCAGCCTTCTACTCTCTGTCAGTTTAACAAAATTATTGGTCTTTGATGTAACAGATTATTATTGAAAAGGATTAGGACCAcatgtataaatatatttaagttCTGAGAATAAattcagaattctgagatttaaaaaaatcataattctgactttaatctcagaattctgactttacaCTCAAATTAATGATTCACATGTGGACCTTATCGTCTTCCGTCAGCCTATGGATTTAGTTTAATGTTTTGCTTTCTTGCCTGAGAAGACAACAATTCATTTACTGAAATGTCTTATCAAAGATGCTAAACGCTCGGTATGCAGTGATATGACTGACATGTGCACAGAATACTAATACGCACGTAATATGTACATTTATTGGAAAATACTGTAGTACTCCTCATCATTTGACCTAAGATAGTATTGCTTATTAGTTGTGGGAGTGGATGGTTTGTCTTATTACGTTTACTGTTTGAGGAATGATGTTATTCAAGTGCTGCGTCATAGTCAAAACAGGTTTAAACATCCATCGACTGCAGCGATCTAGGGTTAAGGTCACAGGTACttagctctgtgtgtttgtgtaacaaAGTATCACTCCTCTTGATCCCTCTCGGAATCTGATAAAGGTTTTTTCCAACGTCGGGAGCTGGCATCACATGCATTAGAGGTGGCGGCGCGTGCCATTTTACGTCATCGAGATGTCAGAGTTCAAGTTCAGGTTGTTGTGGAGTTGTTGGATGCGTACGCACCACTTTTGGCATAATGCCAGAGCCTGAAAGTGATGTAACTTATGTAGTATCCTAAAGGAAATGAATTCGGCACCAAGCCAAACATCTGCGCTGGACTGTCAAAAGATTCCATATTACTAAAAAGGGCATTTATTGACATTTTGACTCTGTCACAGCACAAAATGACTACACTACATCTGCTGATAGGACGGATCGATACCACTGACTCCATGTTTACTTCATCAGCTCCTGACATTTCAGTCTTTCGGGCAAAAACACCTGCGTGCTTAGGTCGAGGCAAACTTTAGTGCAAGTCAAATGAGGCTCAGTTGGTCCTAACGCGTGCCAAGACAATATTTTCCACACCAACATCAGCCTGTGGAACCGTTATGCTGATTATATGAACGCCTGTGGAAAGTTCCCAGCAGGGCAGCTTTATATGGGGAATGGAACCACTACAAGTGGAATTACAAATCCTGCTATACTCCAAGTTGCTTTAGTCTTGTCTTTTTAAATTGTGATTCAAACGCTCAATGGTCTTTTAAGCtcccaacgtctccttcaaGGCAGcactgcgaccgttgacttcaaagaacctaaccctaaccataaccatagcctaatcctagtgccttccagacagcactgcctggaaggagatgttgggggcttaaaacacagataaacgaTTCAAACATtaatttaatcatttatttaatcATCTCAGTGAGCAGCCTTTTTCCTAATTTTGCATTTTCCGAGTAAGAAATGTAGGGTACGCCGGTgttattcgggttttagaggcattctttggacacgTATGCAGCGCATTCGGAATCTGTGTCTCAATCGGGGTTTTTACcgcagtttgtgacagtttacaGCAAGGCTGCGGTGGAGATGCCTGAACCAAAAAGCAAAGAAGGAGACAcgcagctacttttaaacatgatGAAAGACTCGGATATCAACAGCTTTTTGGATTTGCCCAAACATCGCAACGCCAAACTTTTcaagaatgaataaataaaagaggGAGAATGTGTTTGCACGGTCGAACAAGTCCCCCCACCTGtggcaaaaactttgaaaaatccTATTTAgcacggctgcatgtaaacatgaatatTACAAACAGACTAAGATGTACGTGCAAACCTAGTCAGTGAGATTGAGATcattgaatatatatattatgagcCTACATTTGAGTAATACTCAGATTCTCATTTTATGATTTTTAGGGGAGAGCAGGGGCAAAAGTACCATTTTtcagaaaaacatatttttaaaagatATTGTTTTAGACAGAGATATATTTTTGCTGTGGTCAATAACTCACAAGTGTGGTCTATCAATACCAGGTGGTATTTTGTACAAATGTCGAATGACTTCAGTATAATTTCACTTTGAACATAAGTTGCACATTGTTACTTTCGACCCCATCAGTAGGGACGAAAGTAACACACAGGTGGGTCAAAAGTAACACAACAATACAagctagattttttttattactcttgttttcattaaatatatctGACTATAACTTTGTTAATATGTAACTGCAAA

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU311901 False 699 lncRNA 0.42 1 23859060 23859758
XM_039791102.1 True 4854 mRNA 0.41 2 23858219 23863974

Neighbor

gene id symbol gene type direction distance location
sbf1 sbf1 coding downstream 48873 23718339 ~ 23809346 (-)
cbll1 cbll1 coding downstream 174151 23677168 ~ 23684068 (-)
slc26a5 NA coding downstream 241143 23594352 ~ 23617076 (-)
dnajc2 dnajc2 coding downstream 269459 23562160 ~ 23588760 (-)
phax NA coding downstream 326412 23529757 ~ 23531807 (-)
glt8d2 glt8d2 coding upstream 4182 23868156 ~ 23885592 (-)
net1 net1,LOC104963784,LOC103383002,LOC107560732 coding upstream 202435 24066409 ~ 24109573 (-)
podxl podxl coding upstream 392809 24256783 ~ 24284709 (-)
LOC120553465 nfyb coding upstream 501364 24365338 ~ 24375224 (-)
slc41a2b LOC103365955,LOC104923736,LOC106530824 coding upstream 644802 24508776 ~ 24565806 (-)
G229909 NA non-coding downstream 144542 23713456 ~ 23713677 (-)
G229908 NA non-coding downstream 151022 23702704 ~ 23707197 (-)
LOC120553168 NA non-coding downstream 216715 23623580 ~ 23641504 (-)
G229872 pmpcb non-coding downstream 297877 23538248 ~ 23560342 (-)
G229867 NA non-coding downstream 330680 23527105 ~ 23527539 (-)
G229952 NA non-coding upstream 82523 23946497 ~ 23948780 (-)
G229987 NA non-coding upstream 216553 24080527 ~ 24081153 (-)
LOC120553435 NA non-coding upstream 253758 24117732 ~ 24202125 (-)
G230067 NA non-coding upstream 340056 24204030 ~ 24225411 (-)
G230089 NA non-coding upstream 451109 24315083 ~ 24315857 (-)
LOC120553170 NA other downstream 146415 23690519 ~ 23711804 (-)
G229907 NA other downstream 158021 23699697 ~ 23700198 (-)
G229716 NA other downstream 618646 23104760 ~ 23239573 (-)
glipr1a NA other downstream 647722 23203768 ~ 23210497 (-)
LOC120553090 NA other downstream 2047122 21771088 ~ 21811097 (-)
G229950 gdi2,LOC100708443,LOC102215003 other upstream 44582 23908556 ~ 23914692 (-)
sult4a1 sult4a1,LOC102784496 other upstream 1327287 25191261 ~ 25217693 (-)
LOC120553115 NA other upstream 1731604 25595578 ~ 25601380 (-)
mkrn1 mkrn1 other upstream 2307346 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 2511718 26375692 ~ 26381365 (-)

Expression


Co-expression Network