G229976 (net1)


Basic Information

Item Value
gene id G229976
gene name net1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24065214 ~ 24066989 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311953
TTCAGTTGCAAATCTTACACAGATCTTTATTGTTCTTTAATTACATACAGTTCGTAGCAAGCAAGTTGccctttttgctttcttctctttttctcatctTGTGCACATACAAAAACCTTCTTTTTGTGTCTCCCTTCCCCTACATACTTTTTCCCATCGATTTCACTCACTTGATGTTTACCATCTATCATCCATCTACGAGCAAGATATCACATCAACTTACGCAGGAAGTTAATGGAGTTAAACATCTTGCGTTGACGATCTATTTCAGTTCCAAAACACAGATTTATCcatcttttctcttttcccttCTGCCTTCAACAACATTCTCTTATTTCCATCTTGTACATGTTTTACTGTCTGTGTAAATACATCCTGCTGCCTCTACGGTTACACGCAGTGTCCACAACTAAAGCTCCATGCAAGATGCTACACTGAAAAGTGATCCGTTTCATCCTGAAAAGTCCGCTTTTCAAAAACCAACATGGCTCAGTTcaaaattttgtttcaaaacaaAACTCCTCATCTCTCGTCATGATTCGACATGGGATGATATACGACCACTATACTTCATAGTGATGTCTGctcaaaacagagagagactgaagtcTCATATGTCACTGGATTTAAATTAATGCCTCTGACTGCagtaaatgcagaaaaaaaaaaaaaaaagtgtccagGTCCTAACATCTGTCATTAAAGGAATGTATAAAAATAAGACGTGTCTTCTGATTAATCTCAAAATCAGACTTTTACAGAGAAATTTGTAGCTTTGTGTAGTATATCATCATCTTTTGGGGaaaggtcTAAAATAATGCTTAAATATCAAATTAATAGTAAACAGGATTGAATGCACCACCTCTATGCTTGtcaacacgacacacacacacacacacacagatttgtgTGTGGAAATGTGCGTTTGCTTCTCATTGGGCTTCCCTTTTTCGGAGCTGGTGGAAGCCGTGCACGTCTCTCCAgaatactgtgtctctgtgggaTGCACGTGGATGGAGGGGTCAGGTAAATAGCTGCCGAAGAGGACAGTAACACAGAACACTGTTTTAATaatacgcacgcacgcagacacacataaatacaagtACCACGCTTCTCCAcgttgtgtttcctttttacaaaaatgtccacCCAGGAGTCCATTTTTCTCCTTTTCACCTCACTTCACACCATAGTCTCTTTTCTCTTCCCTAAAGAGCACAGAGACTTCTTGTCCTTTTTGGTTTTGTGCGATGTGAGCGAGGAGAGCGGCGACGTCGAAGAGGACGACGACGAAGCTGACGAGGAGGAGCGGGATAGGGAGGACTTTGTGGTGGGGCTGGGCGCCGCGCTGTTGCACGGCGTGCTGGGGGCGGACTGAGAGGTCGGCCGCAGGCAGTTCTCATCCGCCTCCTCCATGTGGACGATGGCGGAGATGGAGGACGGGCGGCGCTTGGAGCGGGCGTCGCTCGCCGGCGGGGGGGCCGGCGCCGAGGGCTCGCCGAGCGGCCGGTGGACGGAGATGGCGCTGCGGAGGCAGTTCAGCCACTGCTGCTTGTGGAAGACGTCGTTGACCTGCAGGGTGTGGGACTGCGCCTGGCTCGGGTCTTGGGAACGCACGCGGAA

Function

symbol description
net1 Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1).

NR:

description
PREDICTED: neuroepithelial cell-transforming gene 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311953 True 1626 lncRNA 0.46 2 24065214 24066989

Neighbor

gene id symbol gene type direction distance location
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 131338 23924156 ~ 23933876 (+)
gdi2 gdi2,LOC104923747 coding upstream 151401 23899241 ~ 23913813 (+)
ankrd16 ankrd16,LOC102787719 coding upstream 167316 23886747 ~ 23897898 (+)
trnay-gua_62 NA coding upstream 177790 23887337 ~ 23887424 (+)
ppp6r2a LOC104923754 coding upstream 358246 23686003 ~ 23706968 (+)
mkln1 mkln1 coding downstream 142630 24209619 ~ 24249507 (+)
ift46 LOC107372934 coding downstream 234776 24301765 ~ 24308444 (+)
LOC120553464 LOC107381693,LOC105020203 coding downstream 253287 24320276 ~ 24365349 (+)
chst11 chst11 coding downstream 317909 24384898 ~ 24478763 (+)
nopchap1 LOC104942935 coding downstream 499252 24566241 ~ 24571321 (+)
G229974 NA non-coding upstream 70379 23994566 ~ 23994835 (+)
LOC120553072 NA non-coding upstream 93601 23969947 ~ 23971613 (+)
G229945 NA non-coding upstream 116676 23947693 ~ 23948538 (+)
G229938 NA non-coding upstream 148826 23915811 ~ 23916388 (+)
G229841 cbll1 non-coding upstream 385906 23667703 ~ 23679308 (+)
LOC120553514 NA non-coding downstream 21036 24088025 ~ 24095165 (+)
G229994 NA non-coding downstream 45976 24112965 ~ 24116121 (+)
G230011 NA non-coding downstream 193070 24260059 ~ 24264065 (+)
G230109 NA non-coding downstream 415321 24482310 ~ 24485517 (+)
G230192 NA non-coding downstream 728964 24795953 ~ 24798741 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 119574 23934300 ~ 23945640 (+)
adm2a NA other upstream 216590 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 624551 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1322035 22739717 ~ 22743179 (+)
G229428 NA other upstream 2196917 21867201 ~ 21868297 (+)
LOC120553083 NA other downstream 242553 24309542 ~ 24314707 (+)
G230148 LOC102781993,LOC101465723 other downstream 553823 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 1295893 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1574851 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1743418 25810407 ~ 25812828 (+)

Expression


Co-expression Network