G229994


Basic Information

Item Value
gene id G229994
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24112965 ~ 24116121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311974
TCTGCTttattgttgattttaaaataaaaaggcagtTTGATTCACTTCCAACAGCTCAATAGACttaaaagctttagtgcgtaactttttgatattaatgaacgtccgttacattccagccgttgccaaatgagttgctccaaagctaattaagactatcagctccacacaactctccctggatttctcagtatggctatgtccggtgactttctcccccatgaggaattctaagtaatgacaacaaaactgtcggcgcgtccacatgatacaagccttccgtgatcgcgcagcaccccccacacctcctccactcagttgctagtagccaaggaggacacggaggattaaaaaaacatggactcttcagaaaggTCATTATTTTTGCTCGATTTTCTGTAcacgaaagtcgccggacgccacaatcttctgaacatagtcctactgagaaatccagagagagttgtgtggagctgatagtcttaattagctttgtagcaactcatttggcaacggctggAATGTAACGAACGTTCATTAATaacaaaaagttacgcactaaagctgtaacaagtaaaaaaaacaattttgaaCCTGGCTTTACCCTATGCAAACGAGtgccttttttaaaaataagataATGCATCATTTGCGTAttcaaacataacatttcagagaactataaaaaataaatgaaaaaacatttcaCCTTATTCACCTGCAGTGTCTTGTCTTAAAGAGGCGTATCCCGTGACTTCTGTCAGCCTCTAGTGGTGTTCAGTGGGAACTGCAGCAACATCCACCTGTTGCTGGCAATGAAAATGACACAAATACTCCAAATACTCTCTTTTACTAAGGATACAAGTAAGATAGATGTGTTAGAGCTGAGATCAAGTTACCCACAAATAGTACAAGTTGAAAACAACATTCATGAGTCAGGGCTGCTGGATTTTTTGGTCAATGTTGAAATCCCGatgatttaacatttaacattactCTTTGACTTTTTGGGAAGACGCTGCATTTATTGTACcgaaaaaacagtttaaaaggtcccatggcaatttcactttatgaggttgtttaacattaatatgtgttcccccagcctgcctatggtcccccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaaagagacgtTGTGGCATTAAATtataaacacaaaataagatAGTGCACAACAAGTAGTGCACTTTCCCAATCTTTTGAACACAAGTATATAATAAAcgattgcattgtttttgtcatcattaggagccaaaatcgGAATCGCgatcaaaatttgattaattgcacagccctaacatGAGTTTCCGACAAACTCAtgaccaggggcgattctaggatacTGTAGGAATATTTTATaagagtatgtgtgtatgtgatagttgcaaaagagctgtgtacAGTCAAATGGAGGAAGTGTTTAAAAGTACTCCGGGTGACCTCTTGATGCACAGAAGGTTAAGCTTAAATCATGAAAATAGTGTAGGCCTTATATGGCGTAAAAGTGCATTTTTAAAGGTTACGAGAACAAGAAGAGGAAGTTGCACCAGACAGAAGAACCAACcctgtgagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtgtgtgtgtgcggcaaCAGAAGAATCTGCCCTGAGACAGGAGGATGACACCCCATCAAGGAAAAGGATAAAGGTTGAGGGATATTGCAGAACGGGGCTCACAACTTGACAGATACTTTGTTATCCTGAGCTCTGTATTTTCATGTCTGAAGTTAGGGATACTTAGTGTCTTTTGTGAACCCACATGTGTTTTGTAACTTAACTGCTGGACTCCGTAAACTTTGCTTAACTTGACTTCCTCGTCTCAGACTCGATCCTTGAGTTTTGGTATCCATAAGTCCTAACAACGAATAGAGTAATTGGATTCAGATATCTTGGCCTTCGGGCCTGTGTCTTTTTAGACGAAATTCCCTTTCTTCAGATCAGAGCTTCAGTGCCTGGCACCCTTTTAACGTAACTTTTGTAAACGTTATTCCACTGTGCCAAGTGTgcattttaacatcattttggaccatcgTGGTAGGGGACACACTGAATTATGTAACTAGAAAGATACCGACATTTCTGAGAAAACTTCCTTTAAAGCTGAGCCAAAGGGCCATTGCTACAAAGGTGAGGTGGTAGCTAATATCAATGAAATCAGACATTTATTCATGGAAAAACAGACATTCCCAATAAGCAGTATCACCAACTTTAGAAAATTAGATTACATTTTACTAAATGCTGACTAGCACAAAgtttcagaattttttttctgaatgatCTGGACATCTAGGTTCTGGGTATAGTTTCACAATGCTGGGATATTCCCAGAGCGGAACTCCTCAGCTCACAATAGATTAACACAAACTTTTtttagcgattattttttagGGGTGCCGGGATCAAGTAAAAAAAGGGCTACAATCACCCCCCTGCTCTTGACGGATTTCTTCCAGCTTGaggcaagaaaacaaaaaaaggcaaTAGTTACTTTCTTCTGCTTGTGCTGCTTTTTTGGCTGAAGACTCTCCGACGTATTGATCCACAGTTCTATAACCGATTTCAAATGGTGCTAGAAGGCTGCAGCGGGACTCTAAGCACCAGAGGAAATCAGTTATCTTTtagaggagaaagaagagagaggtcAGTTGTGTGCTTCAGTCCTCCTGAGGGCTCACTCACTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311974 True 3065 lncRNA 0.41 2 24112965 24116121

Neighbor

gene id symbol gene type direction distance location
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 179089 23924156 ~ 23933876 (+)
gdi2 gdi2,LOC104923747 coding upstream 199152 23899241 ~ 23913813 (+)
ankrd16 ankrd16,LOC102787719 coding upstream 215067 23886747 ~ 23897898 (+)
trnay-gua_62 NA coding upstream 225541 23887337 ~ 23887424 (+)
ppp6r2a LOC104923754 coding upstream 405997 23686003 ~ 23706968 (+)
mkln1 mkln1 coding downstream 93498 24209619 ~ 24249507 (+)
ift46 LOC107372934 coding downstream 185644 24301765 ~ 24308444 (+)
LOC120553464 LOC107381693,LOC105020203 coding downstream 204155 24320276 ~ 24365349 (+)
chst11 chst11 coding downstream 268777 24384898 ~ 24478763 (+)
nopchap1 LOC104942935 coding downstream 450120 24566241 ~ 24571321 (+)
LOC120553514 NA non-coding upstream 17800 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 45976 24065214 ~ 24066989 (+)
G229974 NA non-coding upstream 118130 23994566 ~ 23994835 (+)
LOC120553072 NA non-coding upstream 141352 23969947 ~ 23971613 (+)
G229945 NA non-coding upstream 164427 23947693 ~ 23948538 (+)
G230011 NA non-coding downstream 143938 24260059 ~ 24264065 (+)
G230109 NA non-coding downstream 366189 24482310 ~ 24485517 (+)
G230192 NA non-coding downstream 679832 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 1068691 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 1235756 25351877 ~ 25352174 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 167325 23934300 ~ 23945640 (+)
adm2a NA other upstream 264341 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 672302 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1369786 22739717 ~ 22743179 (+)
G229428 NA other upstream 2244668 21867201 ~ 21868297 (+)
LOC120553083 NA other downstream 193421 24309542 ~ 24314707 (+)
G230148 LOC102781993,LOC101465723 other downstream 504691 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 1246761 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1525719 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1694286 25810407 ~ 25812828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G70136 NA non-coding NC_035903.1 CM008306.1 40706550 ~ 40709067 (-)