LOC120553115


Basic Information

Item Value
gene id LOC120553115
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25595578 ~ 25601380 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU312561
CGGACCGACAGCCGACAGCGTCCCCGCCGTTTAACAGAAAGAACTCCcgaataaaaaacacatttactttCGTTTTGGCTCGCGGGGCAGCTTTATTTGACGATACGACACTTTTCTGTAACGTTACGGAGACCAACTGAAGGTAAAATCATGAAGACATTTGTCTGCGCACTTCTCGTCGGtctgctctgtctctgtccttcaACAGCCAAAGAATCGCCGCCCAAGGTCCAGGTTTACAGCCGGGAACCGGGACACTTTGATAAAGTCAACACCCTCATCTGTCACGTGAGCGGCTTCCACCCACCAGAGATCACCATCCAACTGCTCAAGAACCAACAGGAACTGCCAGGATCCCAGCAGACCGACCTGGCCTTCGAGGAGAACTGGCACTACCACCTAACCAAACATGTGCCCTTTACCCCAAAGAGCGAAGACAATTTTGCCTGCAAAGTGACTCACATGGGAAAGACCCAAACATACGTCTGGgAGTCAGATATGTAAGCTCTACGCTCGGCCTTGCTCCAGGTGTGCTCAGTATCAGGAAGATGAAGAAGATTAATTGACTATCTGTAACCTTGGGGTTTTATCGTGAAAGTTTGAGCATCATGAAAATGTCAGAAACAATTGCACTTCAACTTCTCTGTATGTTTTTATACCAGAAATAGCAAATGGCAATAAAGCTCCATTAAGTAGTAGTTGAACCACTAGATGTGCCTGTTAGTGTGTAGCCACACAGGAACagatcaataaataataataataataataataataataaataaggtgGAGGGTAAGTGATCACAAAGATAAATACAATACATACCTGTCCATTCGGTTTATCTCTCCAAAATAATGTGCATGAACAAAATATGAAATCAGTTTTTAGTTAAATTGAATGATTGATGTTGGCATCCAGTCAGCTTTGAGCCCACAACCAACTTTACCATTGTACTGCTTAATGGAGCTTTAAGGAAGCCTTTAGTGATTGGACATGTAAGTGTTTGCATTCTGTGTTTTTAATGCTTAATCTGTAATGGCTAAAATATTTTAATCATAACTCTTCTTAATCATTTGAATATACATGAAATTGCTTTTTTAATTATCTTGTGCACCATTTTATCTTCTGAAATATTAAGCTTATTATTTTCCAGTTCATTATGCAGAAGGACTCCCAAACCTGAGCACTTATTTATGTAGATCTCAGTTGATGAATATTGACATGTTAGGCTCAGAATGTCAGAATGTATCCTATACAATATGGTTGGGTAATAAAGGTGTTTATCACGC
>XM_039791199.1
TTAGTCATTTCGACCGGACCGACAGCCGACAGCGTCCCCGCCGTTTAACAGAAAGAACTCCcgaataaaaaacacatttactttCGTTTTGGCTCGCGGGGCAGCTTTATTTGACGATACGACACTTTTCTGTAACGTTACGGAGACCAACTGAAGGTAAAATCATGAAGACATTTGTCTGCGCACTTCTCGTCGGtctgctctgtctctgtccttcaACAGCCAAAGAATCGCCGCCCAAGGTCCAGGTTTACAGCCGGGAACCGGGACACTTTGATAAAGTCAACACCCTCATCTGTCACGTGAGCGGCTTCCACCCACCAGAGATCACCATCCAACTGCTCAAGAACCAACAGGAACTGCCAGGATCCCAGCAGACCGACCTGGCCTTCGAGGAGAACTGGCACTACCACCTAACCAAACATGTGCCCTTTACCCCAAAGAGCGAAGACAATTTTGCCTGCAAAGTGACTCACATGGGAAAGACCCAAACATACGTCTGGgAGTCAGATATGTAAGCTCTACGCTCGGCCTTGCTCCAGGTGTGCTCAGTATCAGGAAGATGAAGAAGATTAATTGACTATCTGTAACCTTGGGGTTTTATCGTGAAAGTTTGAGCATCATGAAAATGTCAGAAACAATTGCACTTCAACTTCTCTGTATGTTTTTATACCAGAAATAGCAAATGGCAATAAAGCTCCATTAAGTAGTAGTTGAACCACTAGATGTGCCTGTTAGTGTGTAGCCACACAGGAACagatcaataaataataataataataataataataataaataaggtgGAGGGTAAGTGATCACAAAGATAAATACAATACATACCTGTCCATTCGGTTTATCTCTCCAAAATAATGTGCATGAACAAAATATGAAATCAGTTTTTAGTTAAATTGAATGATTGATGTTGGCATCCAGTCAGCTTTGAGCCCACAACCAACTTTACCATTGTACTGCTTAATGGAGCTTTAAGGAAGCCTTTAGTGATTGGACATGTAAGTGTTTGCATTCTGTGTTTTTAATGCTTAATCTGTAATGGCTAAAATATTTTAATCATAACTCTTCTTAATCATTTGAATATACATGAAATTGCTTTTTTAATTATCTTGTGCACCATTTTATCTTCTGAAATATTAAGCTTATTATTTTCCAGTTCATTATGCAGAAGGACTCCCAAACCTGAGCACTTATTTATGTAGATCTCAGTTGATGAATATTGACATGTTAGGCTCAGAATGTCAGAATGTATCCTATACAATATGGTTGGGTAATAAAGGTGTTTATCACGCTT

Function

GO: NA

KEGG:

id description
K08055 B2M; beta-2-microglobulin

RNA

RNA id representative length rna type GC content exon number start site end site
TU312561 False 1290 TUCP 0.40 4 25595580 25601366
XM_039791199.1 True 1306 mRNA 0.40 4 25595578 25601380

Neighbor

gene id symbol gene type direction distance location
irak3 NA coding downstream 1480 25577463 ~ 25594098 (-)
hspa14 hspa14 coding downstream 28148 25557242 ~ 25567430 (-)
rint1 rint1 coding downstream 70622 25502533 ~ 25524956 (-)
LOC120553669 NA coding downstream 411093 25113999 ~ 25184485 (-)
samm50l samm50,LOC108250208,LOC102304796 coding downstream 731869 24843392 ~ 24863709 (-)
LOC120553116 NA coding upstream 2014 25603394 ~ 25606588 (-)
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 255260 25856640 ~ 25902001 (-)
rergla rergl,LOC104934027 coding upstream 512420 26113800 ~ 26120318 (-)
LOC120553108 LOC106676404,LOC106675180,LOC106675933,LOC106633052 coding upstream 527434 26128814 ~ 26140034 (-)
tmem121b cecr6,LOC102790305 coding upstream 567729 26169109 ~ 26171253 (-)
G230433 NA non-coding downstream 18682 25574924 ~ 25576896 (-)
G230386 NA non-coding downstream 40264 25555115 ~ 25555314 (-)
G230370 NA non-coding downstream 82007 25512926 ~ 25513571 (-)
G230369 NA non-coding downstream 82727 25512142 ~ 25512851 (-)
G230368 NA non-coding downstream 95369 25498188 ~ 25500209 (-)
G230440 NA non-coding upstream 16798 25618178 ~ 25618444 (-)
G230450 NA non-coding upstream 40414 25641794 ~ 25650573 (-)
LOC120553546 LOC107747503 non-coding upstream 86897 25688277 ~ 25690733 (-)
G230541 NA non-coding upstream 524653 26126033 ~ 26126401 (-)
G230548 NA non-coding upstream 560111 26161491 ~ 26162952 (-)
sult4a1 sult4a1,LOC102784496 other downstream 377885 25191261 ~ 25217693 (-)
G229950 gdi2,LOC100708443,LOC102215003 other downstream 1680886 23908556 ~ 23914692 (-)
LOC120553046 NA other downstream 1731604 23858219 ~ 23863974 (-)
LOC120553170 NA other downstream 1883774 23690519 ~ 23711804 (-)
G229907 NA other downstream 1895380 23699697 ~ 23700198 (-)
mkrn1 mkrn1 other upstream 569940 26171320 ~ 26196510 (-)
G230594 mrps33 other upstream 774312 26375692 ~ 26381365 (-)
G230730 NA other upstream 1515826 27117206 ~ 27118597 (-)
ipo8 ipo8 other upstream 1900720 27502100 ~ 27550712 (-)
LOC120553767 LOC104927640,LOC103363517 other upstream 2739702 28341082 ~ 28430526 (-)

Expression


Co-expression Network